Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n18r
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39545| Best HMM Match : TolA (HMM E-Value=0.12)                     36   0.046
SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62)                   28   9.2  

>SB_39545| Best HMM Match : TolA (HMM E-Value=0.12)
          Length = 1189

 Score = 35.5 bits (78), Expect = 0.046
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -1

Query: 552 SLMEGPRMTPEQLKRTDMIQQYMRRNEAGSSVEGCPLRTGG 430
           S+   P +T  Q ++  +  QY++RNE  SSVE   L TGG
Sbjct: 772 SIQSAPTITEIQKEKEIISNQYLKRNEESSSVEEPQLETGG 812


>SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 90  ISVIYNTMQRRSWCVCVYCM 31
           +S IYNT+     CVCVYC+
Sbjct: 906 LSAIYNTIWVACVCVCVYCL 925


>SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62)
          Length = 526

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 3   QMTEHAHIRTYNTHKHTTTGAA 68
           ++ +H H+R YNT  H  TG A
Sbjct: 245 RLGQHGHVRLYNTIHHRPTGNA 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,803,113
Number of Sequences: 59808
Number of extensions: 345513
Number of successful extensions: 907
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)