Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n18r
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    69   6e-14
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   5.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   7.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   7.0  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 68.5 bits (160), Expect = 6e-14
 Identities = 43/96 (44%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
 Frame = -1

Query: 735 YKPHKKFRAMR-RDTGEAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIS------LS 577
           YKPHKKFRA+R +D+ EAE                                       LS
Sbjct: 641 YKPHKKFRALRQKDSAEAEPAVIVQHTQSQLHLHLTSPPARSPSSQAQASQCPQTASLLS 700

Query: 576 STHSVLAKSLMEGPRMTPEQLKRTDMIQQYMRRNEA 469
           STHS LA+SLMEGPRMT EQLKRTD+I  Y+ R EA
Sbjct: 701 STHSTLARSLMEGPRMTAEQLKRTDIIHNYIMRGEA 736


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 726 HKKFRAMRRDTG 691
           +KK+RA+R DTG
Sbjct: 52  NKKYRALRLDTG 63


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 522 QESFSAPPLNF*RAPNAWMTEKCAV 596
           Q   S PP+++ +A + WM+  C+V
Sbjct: 262 QSQQSLPPVSYVKAIDVWMS-SCSV 285


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +1

Query: 52  PRPALHCIINYTYIVLNYVNF--QSIALSSFGAGHARTRPTRIITYNI 189
           P P+LH ++   YI+  ++      + +  F A  +   P+ +   N+
Sbjct: 43  PNPSLHYLLALLYILFTFLALLGNGLVIWIFCAAKSLRTPSNMFVVNL 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,060
Number of Sequences: 438
Number of extensions: 3129
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)