Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n18f
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase Bgl2|Schizosacch...    27   3.0  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   7.0  
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...    25   9.3  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   9.3  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    25   9.3  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   9.3  

>SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase
           Bgl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 321

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 427 YPNARKRVSSQRCNSRRRLVHTSKQLPLNLMTLLGCW 537
           Y N  +  ++  CN+   L+    Q P N   +LG W
Sbjct: 71  YTNMIRTYATSDCNTLEYLLPALAQSPYNFSAILGVW 107


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 192 SVNNRVAIQCERMSEHRGVVS-GEHQSD 112
           S NNR A+ C     H G+ S GE  SD
Sbjct: 192 SENNREALICSHCFHHNGLASYGEKASD 219


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 549 APLAPATEERHQVQRQLLARVHETTTTVASLRG 451
           APLA    +   ++  L+  VH TT T  ++ G
Sbjct: 158 APLAKVINDTFGIEEGLMTTVHATTATQKTVDG 190


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 359 TNSQRDPQWCCEISQCTCAIRSCTQTRESAYPRS 460
           T S + P    E+++  C  R C  T+    PR+
Sbjct: 317 TTSSKGPTRLYEVARFNCTTRGCEYTQNIPCPRA 350


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 549 APLAPATEERHQVQRQLLARVHETTTTVASLRG 451
           APLA    +   ++  L+  VH TT T  ++ G
Sbjct: 158 APLAKVINDTFGIEEGLMTTVHATTATQKTVDG 190


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 381 NGVVKYHNAPVRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELD 518
           N    Y +A  R    PK  KAR   A+Q    +R HE+  + ++D
Sbjct: 359 NQTNSYLSAANRLQDSPKISKARTDDALQALEVARVHEKLLSDKVD 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,850
Number of Sequences: 5004
Number of extensions: 41591
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)