Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n18f
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0265 - 13638816-13641348,13641432-13641490                       29   2.4  
05_05_0190 - 23110152-23112137                                         28   5.5  
01_05_0633 + 23840427-23840562,23840699-23840768,23840846-238409...    28   5.5  
09_04_0681 + 19416207-19416515,19416537-19416756,19416848-19417455     28   7.2  
08_02_1501 + 27568934-27569287,27569372-27569458                       28   7.2  
07_03_1120 + 24123822-24124318,24125877-24126006,24127334-241273...    28   7.2  
06_02_0055 + 10986228-10986388,10986717-10986899,10987013-10987652     28   7.2  
02_03_0296 + 17393706-17394052,17394278-17394388,17395507-17395687     27   9.6  

>04_03_0265 - 13638816-13641348,13641432-13641490
          Length = 863

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 113 SLWCSPLTTPRCSDIRSHWIATLLFTDYSVSVI*NNILS 229
           +L CSPLT   C ++RSH +  L  TD S   + + IL+
Sbjct: 382 NLGCSPLTPISCQEMRSHQL--LALTDVSYFDVSHTILN 418


>05_05_0190 - 23110152-23112137
          Length = 661

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 67  VVHQFESRTRDSLTVIALVFAANYTAVLRHSLTLDCNSI 183
           VV  +E+  RD L  +  VFA  Y+A LR  +T  CN++
Sbjct: 366 VVDMYEA-VRDLLPDLDPVFADPYSAALRAEVTAVCNTL 403


>01_05_0633 +
           23840427-23840562,23840699-23840768,23840846-23840951,
           23841086-23841184,23841320-23841442,23841555-23842691
          Length = 556

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 183 NRVAIQCERMSEHRGVVS-GEHQSDHCERVSRSRLELV 73
           ++ +IQ       R VVS  E  +D CER SRSRL L+
Sbjct: 509 SKSSIQQNTTPVERIVVSDSEDSADECERPSRSRLSLM 546


>09_04_0681 + 19416207-19416515,19416537-19416756,19416848-19417455
          Length = 378

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = +3

Query: 453 LAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRVASMRARARDCPTYS 632
           L  +QQ  ++ +  +AAAAEL+   R  A +V  H+      RDR A   A     P Y 
Sbjct: 263 LHLLQQQQAAASGSRAAAAELEQERRKAAELV--HMLHAVMLRDRAAD--AMPPPMPCYY 318

Query: 633 QP 638
            P
Sbjct: 319 AP 320


>08_02_1501 + 27568934-27569287,27569372-27569458
          Length = 146

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/71 (28%), Positives = 28/71 (39%)
 Frame = +3

Query: 399 HNAPVRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFT 578
           H   +  G   +R K R +   + +  SRA +QA   EL+   RLL     A    C   
Sbjct: 60  HQQQLGGGGGVERRKRRAMKNRESAERSRARKQAYLQELEQEVRLLRAENAALRHQCHQL 119

Query: 579 RDRVASMRARA 611
           +   A   A A
Sbjct: 120 KAAAAEAEAEA 130


>07_03_1120 +
           24123822-24124318,24125877-24126006,24127334-24127379,
           24128364-24128455,24128550-24128630,24128735-24128832,
           24128972-24129053,24129166-24129258
          Length = 372

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/75 (25%), Positives = 37/75 (49%)
 Frame = +3

Query: 414 RFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRVA 593
           R+G VP+ E  R  AA++  + +   E ++AA    +      V++A+  + E +R  + 
Sbjct: 75  RYGAVPEAEAGRAAAAVEAEAYAAVTESSSAAAAPASVEDGIEVLQAY--SKEVSRRLLE 132

Query: 594 SMRARARDCPTYSQP 638
             ++RA   P  + P
Sbjct: 133 LAKSRAAPSPAAAAP 147


>06_02_0055 + 10986228-10986388,10986717-10986899,10987013-10987652
          Length = 327

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +1

Query: 451 SSQRCNSRRRLVHTSKQLPLNLMTLLGCWREWCALISTRASSRVIASLPCEPELA 615
           S++R  S    +   K    ++  +L  W EW  L+     S  I   P  P+LA
Sbjct: 87  STKRMTSHMSAIVVVKSTVTSVALVLSLWGEWDGLVPREEYSSQIRDQPIWPKLA 141


>02_03_0296 + 17393706-17394052,17394278-17394388,17395507-17395687
          Length = 212

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 409 LCDSVVYPNARKRVSSQRCNSRRRLVHTSKQLPLNL 516
           L ++V+  ++ +R+     ++RRRL HTS+ +P  L
Sbjct: 142 LLEAVLDVSSTRRLQRFNAHARRRLKHTSRCMPARL 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,296,727
Number of Sequences: 37544
Number of extensions: 281397
Number of successful extensions: 909
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)