Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n18f
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)         33   0.26 
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.4  
SB_17056| Best HMM Match : Lipase_3 (HMM E-Value=9.9e-09)              28   7.4  
SB_40648| Best HMM Match : DUF646 (HMM E-Value=6.9)                    27   9.8  
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)                    27   9.8  
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   9.8  

>SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)
          Length = 609

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -2

Query: 597 WKRRDHA*TRTCRDERAPLAPATEERHQVQRQLLARVHETTTTVASL 457
           W RR H  + T +   AP     EER  V+RQ+LA+       V SL
Sbjct: 558 WSRRSHT-SSTAKRASAPEKTPVEERSHVRRQILAKAAVAGVQVLSL 603


>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +3

Query: 414 RFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDA 524
           R  R  K  ++RIL A +Q SSS+    A  A+LDDA
Sbjct: 518 RLLREKKALESRILDAEEQVSSSKGMITALQAKLDDA 554


>SB_17056| Best HMM Match : Lipase_3 (HMM E-Value=9.9e-09)
          Length = 627

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 505 PLNLMTLLGCWREWCALISTRASSRVIAS--LPCEPELATVPPTR 633
           P   + + GCWR  C L+  R++ +      +P +P+     PT+
Sbjct: 175 PKYRVLISGCWRALCFLLDKRSNGQTEGEQVIPVKPDSQAPDPTK 219


>SB_40648| Best HMM Match : DUF646 (HMM E-Value=6.9)
          Length = 218

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/73 (26%), Positives = 29/73 (39%)
 Frame = +3

Query: 420 GRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRVASM 599
           GR P    A    A   +S  ++ +  A    +   +L    ++   D     R+R+A  
Sbjct: 129 GRPPGAVPASARQAAHSTSGEKS-DHTALKPGEKLAQLFPDGLKPVTDPSGHGRERLAER 187

Query: 600 RARARDCPTYSQP 638
           R   RDC  Y QP
Sbjct: 188 RHNGRDCRRYGQP 200


>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
          Length = 1745

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 465 QQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRVASMRARARDCPTYSQP 638
           +QS+ ++ H + AA  L    +     ++   D      +R+A  R   RDC  Y QP
Sbjct: 303 RQSTPAKVHAEGAAPTLS-GEKSDHTALKPVTDPSGHGGERLAERRHNGRDCRRYGQP 359


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 442 KRVSSQRCNSRRRLVHTSKQLPLNLMTLLGCWREW 546
           KR  S+RC+     + ++K L L++M   G WR +
Sbjct: 728 KRPPSRRCDVCNTYLSSTKALALHMMLCHGTWRPY 762


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,931,874
Number of Sequences: 59808
Number of extensions: 329387
Number of successful extensions: 933
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)