Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n18f
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82071-5|CAB04919.2|  514|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z82071-3|CAH04734.1|  336|Caenorhabditis elegans Hypothetical pr...    38   0.006
AY204181-1|AAO39185.1|  336|Caenorhabditis elegans nuclear recep...    38   0.006
AY204180-1|AAO39184.1|  514|Caenorhabditis elegans nuclear recep...    38   0.006
AL110478-13|CAC14397.1|  514|Caenorhabditis elegans Hypothetical...    38   0.006
AF098997-2|AAC68722.2|  796|Caenorhabditis elegans Hypothetical ...    31   0.53 
Z79603-2|CAB01893.4|  500|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AC006607-3|AAK68172.1|  408|Caenorhabditis elegans Prion-like-(q...    28   6.5  
Z81131-2|CAB03425.1|  349|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z82071-5|CAB04919.2|  514|Caenorhabditis elegans Hypothetical
           protein W05B5.3a protein.
          Length = 514

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +3

Query: 411 VRFGRVPKREKARILAAMQQSSSSRAHEQAA 503
           VRFGRVPKREKAR+   MQ+++     +Q A
Sbjct: 184 VRFGRVPKREKARMFEEMQKTNVQSQRDQIA 214


>Z82071-3|CAH04734.1|  336|Caenorhabditis elegans Hypothetical
           protein W05B5.3b protein.
          Length = 336

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +3

Query: 411 VRFGRVPKREKARILAAMQQSSSSRAHEQAA 503
           VRFGRVPKREKAR+   MQ+++     +Q A
Sbjct: 6   VRFGRVPKREKARMFEEMQKTNVQSQRDQIA 36


>AY204181-1|AAO39185.1|  336|Caenorhabditis elegans nuclear receptor
           NHR-85 protein.
          Length = 336

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +3

Query: 411 VRFGRVPKREKARILAAMQQSSSSRAHEQAA 503
           VRFGRVPKREKAR+   MQ+++     +Q A
Sbjct: 6   VRFGRVPKREKARMFEEMQKTNVQSQRDQIA 36


>AY204180-1|AAO39184.1|  514|Caenorhabditis elegans nuclear receptor
           NHR-85 protein.
          Length = 514

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +3

Query: 411 VRFGRVPKREKARILAAMQQSSSSRAHEQAA 503
           VRFGRVPKREKAR+   MQ+++     +Q A
Sbjct: 184 VRFGRVPKREKARMFEEMQKTNVQSQRDQIA 214


>AL110478-13|CAC14397.1|  514|Caenorhabditis elegans Hypothetical
           protein W05B5.3a protein.
          Length = 514

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +3

Query: 411 VRFGRVPKREKARILAAMQQSSSSRAHEQAA 503
           VRFGRVPKREKAR+   MQ+++     +Q A
Sbjct: 184 VRFGRVPKREKARMFEEMQKTNVQSQRDQIA 214


>AF098997-2|AAC68722.2|  796|Caenorhabditis elegans Hypothetical
           protein T10D4.6 protein.
          Length = 796

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 400 TMHLCDSVVYPNARKRVSSQRCNSRRRLVHTSKQLP 507
           +MH CDS   P +  RVS +R  S R L  T    P
Sbjct: 533 SMHACDSPATPESENRVSEERSESSRSLPPTVAVCP 568


>Z79603-2|CAB01893.4|  500|Caenorhabditis elegans Hypothetical
           protein M163.2 protein.
          Length = 500

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +2

Query: 308 NLIFISNHNYTKHG*RFTNSQRDPQWCCEISQCTCAIRSCTQTR---ESAYPRSDATVVV 478
           N  F +  + +KH  R T+S   P +CC+   C CA    +  R   +S +P   A  + 
Sbjct: 327 NKSFTNASDRSKHSKR-THSNEKP-YCCDFGSCACAYTDPSSLRKHVKSKHPEHHAMKMA 384

Query: 479 VSCTRASSCR 508
           +  T+  S +
Sbjct: 385 MRKTQRKSIK 394


>AC006607-3|AAK68172.1|  408|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 10
           protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 311 SSQPMATNNGNCNSDYIN*STRQN 240
           +SQPM+ NNGN    Y   ST QN
Sbjct: 157 NSQPMSLNNGNTMKAYGRRSTAQN 180


>Z81131-2|CAB03425.1|  349|Caenorhabditis elegans Hypothetical
           protein T24D1.3 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +1

Query: 430 PNARKRVSSQRCNSRRRLVHTSKQLPLNLMTLLGCWREWCALISTRASSRVIASLPCEP 606
           P     V     +S+ R   TS ++ +    LLG  R   A IS R S+    +LP  P
Sbjct: 128 PEVPPTVQQPESSSQERASPTSPEITIFSTGLLGLRRRSSARISIRMSATAQTNLPITP 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,849,759
Number of Sequences: 27780
Number of extensions: 240156
Number of successful extensions: 637
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)