Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10n17r
(459 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 169 2e-43
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su... 29 0.45
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 28 0.79
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 27 1.0
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 3.2
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 4.2
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 25 5.6
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 7.3
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 7.3
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 24 9.7
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 24 9.7
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 24 9.7
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 169 bits (410), Expect = 2e-43
Identities = 79/103 (76%), Positives = 93/103 (90%)
Frame = -2
Query: 326 EKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRK 147
+K Q S +HRIRITLTSRNVR+LEKVC+DL+N AK ++LRVKGPVR+PTKIL+ITTRK
Sbjct: 8 QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67
Query: 146 TPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPPV 18
TP GEGSKTW+ ++MRIHKR+IDLHSPSEIVKQITSI+IEP V
Sbjct: 68 TPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGV 110
>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 28.7 bits (61), Expect = 0.45
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -2
Query: 209 KLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 57
K+ +KGP +P K+ T ++P S + + F+ H R+I L+S + +
Sbjct: 92 KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPV 141
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.9 bits (59), Expect = 0.79
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 344 VSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVK 195
+S IEKP+A SPIH + +R L+ V GA++ + VK
Sbjct: 891 LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 27.5 bits (58), Expect = 1.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 353 AAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRS 255
A V + D+EKPQ +V+ R+ L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523
>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 206
Score = 25.8 bits (54), Expect = 3.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 147 NSLW*RFKDLGSFSDENPQESDRPTL 70
N+ W RFK+ G + DE+ E + P+L
Sbjct: 35 NNEW-RFKNAGEYFDEDNNEEEYPSL 59
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 4.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 372 IPAEINNFSIKNCSALNRRNL 434
+ +E+N+ IKN S LN RNL
Sbjct: 592 LESELNSSKIKNESLLNERNL 612
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 73 CRSITLLWILI*KRSQVFEPSPQ 141
C + L W+ KRSQ PSP+
Sbjct: 331 CLNFALAWMFEFKRSQYSNPSPE 353
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 152 RKTPCGEGSKTWDRFQM 102
R +P GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 24.6 bits (51), Expect = 7.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 198 KGPSPHANQDPAYHHP*NSLW*RFKDLGSFSDENPQESD 82
K P+ +ANQ P + N+ W + G FS+ N D
Sbjct: 916 KTPAWNANQTPMVANGTNTSWGQTPAYGGFSETNWDTED 954
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 24.2 bits (50), Expect = 9.7
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 62 QRESVGRSLSCGFSSENDPRSLNLHHKEFYGW*YAGSWLACGLGPLHAASVS 217
+R SV + SC S N P S+ + + W LG LH +S S
Sbjct: 626 KRNSVLSNKSCASSESNTPASVKQDYDDIQSWTIIEE--IQSLGVLHLSSPS 675
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 24.2 bits (50), Expect = 9.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 113 RFQMRIHKRVIDLHSPSEIVKQITSINIEPPV*RLR 6
+F+MRI+ ++D S I + I PPV LR
Sbjct: 124 QFEMRINLDIVDSMIASAIENNKVATEILPPVETLR 159
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 24.2 bits (50), Expect = 9.7
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Frame = +2
Query: 311 LPGVSQCLCLTLQRLPCCLLN---SGR---DKQLFNQKLFSAEPEKPHV 439
LP +C+ LT ++LP SGR D + N S P+ HV
Sbjct: 489 LPETFECISLTYRKLPDSWKQDKCSGRDDLDNSVLNDDYISVAPKPSHV 537
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,733
Number of Sequences: 5004
Number of extensions: 39575
Number of successful extensions: 107
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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