Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n17r
         (459 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y11119-1|CAA72004.1|  120|Drosophila melanogaster S20 ribosomal ...   190   6e-49
AY071742-1|AAL49364.1|  120|Drosophila melanogaster RH47995p pro...   190   6e-49
AE014297-2870|AAF55809.1|  120|Drosophila melanogaster CG15693-P...   190   6e-49
AY071353-1|AAL48975.1|  120|Drosophila melanogaster RE38972p pro...   186   2e-47
BT022291-1|AAY54707.1|  336|Drosophila melanogaster IP08195p pro...    27   9.2  
AY075183-1|AAL68053.1|  388|Drosophila melanogaster AT13019p pro...    27   9.2  
AE014296-1731|AAF50208.2|  213|Drosophila melanogaster CG32044-P...    27   9.2  
AE013599-3908|AAF47233.2|  388|Drosophila melanogaster CG4681-PA...    27   9.2  

>Y11119-1|CAA72004.1|  120|Drosophila melanogaster S20 ribosomal
           protein protein.
          Length = 120

 Score =  190 bits (464), Expect = 6e-49
 Identities = 91/107 (85%), Positives = 96/107 (89%), Gaps = 1/107 (0%)
 Frame = -2

Query: 335 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 159
           KDIEKP   + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGPVRMPTK LRI
Sbjct: 6   KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRI 65

Query: 158 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPPV 18
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVK+ITSINIEP V
Sbjct: 66  TTRKTPCGEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGV 112


>AY071742-1|AAL49364.1|  120|Drosophila melanogaster RH47995p
           protein.
          Length = 120

 Score =  190 bits (464), Expect = 6e-49
 Identities = 91/107 (85%), Positives = 96/107 (89%), Gaps = 1/107 (0%)
 Frame = -2

Query: 335 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 159
           KDIEKP   + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGPVRMPTK LRI
Sbjct: 6   KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRI 65

Query: 158 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPPV 18
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVK+ITSINIEP V
Sbjct: 66  TTRKTPCGEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGV 112


>AE014297-2870|AAF55809.1|  120|Drosophila melanogaster CG15693-PA
           protein.
          Length = 120

 Score =  190 bits (464), Expect = 6e-49
 Identities = 91/107 (85%), Positives = 96/107 (89%), Gaps = 1/107 (0%)
 Frame = -2

Query: 335 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 159
           KDIEKP   + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGPVRMPTK LRI
Sbjct: 6   KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRI 65

Query: 158 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPPV 18
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVK+ITSINIEP V
Sbjct: 66  TTRKTPCGEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGV 112


>AY071353-1|AAL48975.1|  120|Drosophila melanogaster RE38972p
           protein.
          Length = 120

 Score =  186 bits (452), Expect = 2e-47
 Identities = 89/107 (83%), Positives = 95/107 (88%), Gaps = 1/107 (0%)
 Frame = -2

Query: 335 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 159
           KDIEKP   + + +H IRITLTSRNVRSLE VC DLINGAK Q LRV+GPVRMPTK LRI
Sbjct: 6   KDIEKPHVGDSASVHCIRITLTSRNVRSLENVCRDLINGAKNQNLRVEGPVRMPTKTLRI 65

Query: 158 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPPV 18
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVK+ITSINIEP V
Sbjct: 66  TTRKTPCGEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGV 112


>BT022291-1|AAY54707.1|  336|Drosophila melanogaster IP08195p
           protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
 Frame = -1

Query: 351 RCSVRQRH*ETPGRGLPYPPHQDHSYFTQCALAREGLC*PNQ-WSQET---EAACKGPSP 184
           +C  RQ     P   L  P  Q H      AL+ E L    + W Q T   E    GPS 
Sbjct: 3   KCVSRQ---SAPLHELASPDAQHHQSVLTIALSHEDLAQALKIWQQLTGSNEYIAAGPSS 59

Query: 183 HANQDPAYH 157
           H  ++P Y+
Sbjct: 60  HQEEEPFYY 68


>AY075183-1|AAL68053.1|  388|Drosophila melanogaster AT13019p
           protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 335 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQ 210
           K + + Q +    HR  + L    +R+L++   DL+N  KKQ
Sbjct: 310 KLLREEQRDQLEAHRKELKLRDSRIRALKRQRGDLLNAYKKQ 351


>AE014296-1731|AAF50208.2|  213|Drosophila melanogaster CG32044-PA
           protein.
          Length = 213

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
 Frame = -1

Query: 351 RCSVRQRH*ETPGRGLPYPPHQDHSYFTQCALAREGLC*PNQ-WSQET---EAACKGPSP 184
           +C  RQ     P   L  P  Q H      AL+ E L    + W Q T   E    GPS 
Sbjct: 38  KCVSRQ---SAPLHELASPDAQHHQSVLTIALSHEDLAQALKIWQQLTGSNEYIAAGPSS 94

Query: 183 HANQDPAYH 157
           H  ++P Y+
Sbjct: 95  HQEEEPFYY 103


>AE013599-3908|AAF47233.2|  388|Drosophila melanogaster CG4681-PA
           protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 335 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQ 210
           K + + Q +    HR  + L    +R+L++   DL+N  KKQ
Sbjct: 310 KLLREEQRDQLEAHRKELKLRDSRIRALKRQRGDLLNAYKKQ 351


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,213,722
Number of Sequences: 53049
Number of extensions: 504462
Number of successful extensions: 1144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1518217281
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)