Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10n10f
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 39 0.003
03_02_0484 + 8805053-8805538 39 0.003
03_02_0483 - 8804021-8804485 39 0.003
03_02_0478 + 8775892-8776377 37 0.009
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 36 0.028
01_01_0229 - 1943473-1943922 35 0.038
01_01_0231 + 1951047-1951499 35 0.050
11_02_0041 - 7669692-7670312 34 0.087
02_05_0494 + 29486960-29487454 33 0.11
02_02_0077 - 6586638-6587165 33 0.15
01_01_0227 + 1933247-1933699 33 0.20
02_05_0308 - 27754340-27754634,27755591-27755696,27755781-277558... 30 1.1
07_03_0725 + 20991640-20992471,20993308-20993418,20993542-209937... 28 4.3
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761... 28 5.7
05_03_0628 - 16367841-16369259 27 7.5
04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122 27 7.5
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516... 27 10.0
09_03_0007 - 11430123-11430513,11430605-11430794,11431114-114311... 27 10.0
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 27 10.0
02_01_0539 + 3941189-3941896,3942110-3942394,3942508-3943394,394... 27 10.0
>03_02_0485 - 8808139-8808618
Length = 159
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +3
Query: 432 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 545
S +F+RR+ LPE PE +++ + +GVLT+T P++ P
Sbjct: 111 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 147
>03_02_0484 + 8805053-8805538
Length = 161
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +3
Query: 432 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 545
S +F+RR+ LPE PE +++ + +GVLT+T P++ P
Sbjct: 113 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 149
>03_02_0483 - 8804021-8804485
Length = 154
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +3
Query: 432 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 545
S +F+RR+ LPE PE +++ + +GVLT+T P++ P
Sbjct: 106 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 142
>03_02_0478 + 8775892-8776377
Length = 161
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/36 (41%), Positives = 27/36 (75%)
Frame = +3
Query: 432 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRK 539
S +F+RR+ LP+ A PE +++ + +GVLT+T P++
Sbjct: 113 SGKFLRRFRLPDNAKPEQIKASM-ENGVLTVTVPKE 147
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 35.5 bits (78), Expect = 0.028
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +3
Query: 432 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 536
S QF+RR+ LPE A + V++ L +GVLT+T P+
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 35.1 bits (77), Expect = 0.038
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 432 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 536
S QF+RR+ LPE A + V++ + +GVLT+T P+
Sbjct: 101 SGQFMRRFRLPENAKVDQVKASM-ENGVLTVTVPK 134
>01_01_0231 + 1951047-1951499
Length = 150
Score = 34.7 bits (76), Expect = 0.050
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 432 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 536
S QF+RR+ LPE A + V++ + +GVLT+T P+
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGM-ENGVLTVTVPK 135
>11_02_0041 - 7669692-7670312
Length = 206
Score = 33.9 bits (74), Expect = 0.087
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +3
Query: 438 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 545
+F RR+ +P GA V +RL DGVLT+T P KVP
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVP-KVP 174
>02_05_0494 + 29486960-29487454
Length = 164
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +3
Query: 435 RQFVRRYALPEGAAPETVESRLSSDGVLTITAPRK 539
R V ++ LPE AA + +R++ DGVLT+T P++
Sbjct: 106 RAAVTQFRLPEDAAADEASARMA-DGVLTVTVPKR 139
>02_02_0077 - 6586638-6587165
Length = 175
Score = 33.1 bits (72), Expect = 0.15
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 438 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 545
+F+RR+ LPE A + V + DGVLT+T +K P
Sbjct: 117 KFMRRFPLPESADLDGVRAEYK-DGVLTVTVDKKPP 151
>01_01_0227 + 1933247-1933699
Length = 150
Score = 32.7 bits (71), Expect = 0.20
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +3
Query: 432 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRK 539
S +F RR+ LP GA + V + + +GVLT+T P++
Sbjct: 102 SGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKE 136
>02_05_0308 -
27754340-27754634,27755591-27755696,27755781-27755855,
27756039-27757410
Length = 615
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -1
Query: 367 VFTEISSGEKCCTSRLTWNLSLSAFMLEPRSRD 269
+F ++S GE+C ++ T+N+ +SA + R+ D
Sbjct: 401 LFEKMSKGEECLPNQDTYNIIISAMFMRKRAED 433
>07_03_0725 +
20991640-20992471,20993308-20993418,20993542-20993739,
20993860-20993891,20993943-20994153,20994806-20995043,
20995507-20995657,20996171-20996533
Length = 711
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +3
Query: 162 DQDFGLALTPNDMLAAVACPVLSEDYFRPWRQLAAASRD 278
D+ FGLAL DM A AC F+ R L RD
Sbjct: 75 DRVFGLALCRGDMRDAAACAGCVSGAFQRLRALCGRDRD 113
>05_03_0619 +
16274255-16274396,16274775-16274848,16275111-16276139,
16276484-16276702,16277228-16277250,16277482-16277606,
16279480-16279670,16280202-16280360,16281359-16281598
Length = 733
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = -2
Query: 489 PQSQAPRLQAARNVGRTA-LKYTRARLSSLRACLPP--RCTHRQSSPKSLPARSAARPD* 319
P+ Q P + R ++ RA + + C+ P R L A +A+
Sbjct: 598 PRKQMPEFETTRYFNLAGFVEQLRALAAEVGYCITPEYRVVRNFEDKGVLEALWSAKSSP 657
Query: 318 LGTCPCRPL 292
GTCP RPL
Sbjct: 658 YGTCPSRPL 666
>05_03_0628 - 16367841-16369259
Length = 472
Score = 27.5 bits (58), Expect = 7.5
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = -1
Query: 376 PSAVFTEISSGEKCCTSRLTWNLSLSAFMLEPRSRDAAASCLHGLK*SSESTGQATAASM 197
P F +SSG+ T S S+F S++++++ L GLK T ++ S
Sbjct: 251 PLFSFKNLSSGQNAFTGLAGTGFSGSSFSFGSGSKESSSAPLFGLK-----TDGSSFPSF 305
Query: 196 SFGVSANPKS 167
S G S N S
Sbjct: 306 SIGASNNGSS 315
>04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122
Length = 294
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 371 GSLHRNLFRREVLHVQIDLELVLV-GLYAGTEVTRCSRELSPW 246
GS R+ R + L+VQID+E+ L+ G AGT T + PW
Sbjct: 67 GSCFRS--REKYLYVQIDVEIKLIEGDSAGTVCTIYTISEGPW 107
>09_04_0076 + 14350020-14350164,14351020-14351129,14351436-14351601,
14351740-14351840,14351960-14352032,14352111-14352252,
14353239-14353399,14354017-14354129,14354226-14354325,
14354580-14354676,14354798-14354849,14355074-14355175,
14355256-14355402,14355485-14355656,14355752-14355991,
14356565-14356621,14356853-14356942,14357089-14357284,
14358117-14358228,14358305-14358459,14359155-14360580,
14360663-14360857,14361214-14361684
Length = 1540
Score = 27.1 bits (57), Expect = 10.0
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 504 MTVAIPQSQAPRLQAARNVGRTALKYTRARLSSLRACLPPRCTHR 370
+ VA+ Q A RLQ + G + K ARLS A LP + HR
Sbjct: 1378 IAVALLQEIA-RLQRVQGAGALSAKEEMARLSRHLASLPIQAKHR 1421
>09_03_0007 -
11430123-11430513,11430605-11430794,11431114-11431182,
11431601-11431727,11431843-11432083,11432519-11432596,
11433004-11433109,11433560-11433625,11437021-11437043,
11438106-11438177,11438256-11438394,11439505-11439919
Length = 638
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 174 QNLDQQDDWASGCDERGASHPTRMVEETYL 85
QNLD++ DW +E+G+ T++V + L
Sbjct: 241 QNLDEKLDWLGELEEKGSRTITKVVFDAML 270
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = -2
Query: 483 SQAPRLQAARNVGRTALKYTRARLSSLRACLPPRCTHRQSSPKSLPARSAARPD*LGTCP 304
S++PR R++ R+ ++ ++ +S +R R R +SP P R+ + G P
Sbjct: 590 SRSPRKNTRRSISRSPVRLSKRSISPVRGGRSRRSVSRSASP---PRRAISPAQNHGRSP 646
Query: 303 CR 298
R
Sbjct: 647 SR 648
>02_01_0539 +
3941189-3941896,3942110-3942394,3942508-3943394,
3943473-3943643,3943726-3943744,3943763-3944014,
3944100-3944138,3944244-3944282
Length = 799
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +3
Query: 93 SLLPFVLGDWPRVRHNHWP-SRLVDQDFGLALTPN 194
S PFV GD P R +W +R D G PN
Sbjct: 192 SCTPFVFGDIPHPRARNWARARYQKHDDGTIFMPN 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,907,409
Number of Sequences: 37544
Number of extensions: 340755
Number of successful extensions: 1196
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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