Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10n10f
(553 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 60 1e-09
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 54 1e-07
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 51 5e-07
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 51 5e-07
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 51 5e-07
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 50 2e-06
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 47 9e-06
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 38 0.007
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_32739| Best HMM Match : PA (HMM E-Value=0.19) 29 2.5
SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16) 28 4.4
SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0) 28 4.4
SB_53052| Best HMM Match : U79_P34 (HMM E-Value=2.7) 27 7.7
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 27 7.7
SB_40478| Best HMM Match : RpoE2 (HMM E-Value=1.9) 27 7.7
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 60.1 bits (139), Expect = 1e-09
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +3
Query: 300 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 476
D DKFQ+ LDV+ F PEEI+ K +G I V + S++F R Y LPEG
Sbjct: 2 DADKFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESEEG-FDSKEFRRCYNLPEGVD 60
Query: 477 PETVESRLSSDGVLTITAPRKVPDA 551
++ +R++ DG+L + A +K P A
Sbjct: 61 ESSISTRIAEDGMLHVEALKKSPPA 85
Score = 48.8 bits (111), Expect = 3e-06
Identities = 28/80 (35%), Positives = 39/80 (48%)
Frame = +3
Query: 300 DKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAP 479
D KF + LDV F PEE+ VK G+ + + +RQF R + LP
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLPREVDM 154
Query: 480 ETVESRLSSDGVLTITAPRK 539
+T+ RL DGVL I A ++
Sbjct: 155 DTLVPRLGKDGVLYIEADKR 174
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +3
Query: 279 LGSSIKADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 455
L ++ + + DK ++ LDV+++ PEEIS+K G I + Y + +F R Y
Sbjct: 29 LAANTEMEGDKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSEGEHG-YETSEFHRSY 87
Query: 456 ALPEGAAPETVESRLSSDGVLTITAPRKVP 545
LP+G TV SR++ DG+L I A + P
Sbjct: 88 NLPDGVDVSTVSSRITGDGLLHIEALKAEP 117
Score = 27.5 bits (58), Expect(2) = 0.083
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 258 LAAASRDLGSSIKADKDKFQVNLDVQHFSPE 350
+ A++ G K D +F V LDV FSP+
Sbjct: 125 VGASTGSAGDIAKIDDKRFTVTLDVSSFSPD 155
Score = 25.4 bits (53), Expect(2) = 0.083
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 447 RRYALPEGAAPETVESRLSSDGVLTITAPR 536
R + LP+ +++ SRL DG L I A R
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKR 190
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 51.2 bits (117), Expect = 5e-07
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +3
Query: 297 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 473
A K+ ++ LDV+ + PEEIS K +G + V + ++F R + LPEG
Sbjct: 2 AKKNTLEIAKLDVKEYRPEEISFKVENGVVKVQGRHVNEGEFGFEL-KEFRRTFTLPEGI 60
Query: 474 APETVESRLSSDGVLTITAPRKVP 545
PE V SR+S+ G L I A + +P
Sbjct: 61 DPENVTSRISNHGHLHIEARKALP 84
Score = 41.9 bits (94), Expect = 3e-04
Identities = 25/86 (29%), Positives = 40/86 (46%)
Frame = +3
Query: 294 KADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 473
KA +DKF + +DV F PE I V+ ++V Y + F R++ LP
Sbjct: 92 KAKEDKFSMAIDVAGFPPESIKVQVLGNELLV-NANHEVEHEGHYHAMHFNRQFVLPREV 150
Query: 474 APETVESRLSSDGVLTITAPRKVPDA 551
+++ +RL +G L A + V A
Sbjct: 151 DMDSLTTRLDKEGKLHFEAKKSVAPA 176
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 51.2 bits (117), Expect = 5e-07
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +3
Query: 297 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 473
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGV 60
Query: 474 APETVESRLSSDGVLTITAPRKVP 545
V++R+S+ G L I A + +P
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALP 84
Score = 36.7 bits (81), Expect = 0.013
Identities = 22/88 (25%), Positives = 38/88 (43%)
Frame = +3
Query: 276 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 455
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 456 ALPEGAAPETVESRLSSDGVLTITAPRK 539
LP +++ +RL +G L A ++
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKR 173
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 51.2 bits (117), Expect = 5e-07
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +3
Query: 297 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 473
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGV 60
Query: 474 APETVESRLSSDGVLTITAPRKVP 545
V++R+S+ G L I A + +P
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALP 84
Score = 36.7 bits (81), Expect = 0.013
Identities = 22/88 (25%), Positives = 38/88 (43%)
Frame = +3
Query: 276 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 455
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 456 ALPEGAAPETVESRLSSDGVLTITAPRK 539
LP +++ +RL +G L A ++
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKR 173
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +3
Query: 297 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 473
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGV 60
Query: 474 APETVESRLSSDGVLTITAPRKVP 545
V++R+S+ G L I A + +P
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALP 84
Score = 47.6 bits (108), Expect = 7e-06
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +3
Query: 306 DKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPE 482
D+ ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVEAS 297
Query: 483 TVESRLSSDGVLTITAPRKVP 545
V++R+S+ G L I A + +P
Sbjct: 298 NVKTRISNHGQLHIEAMKALP 318
Score = 36.7 bits (81), Expect = 0.013
Identities = 22/88 (25%), Positives = 38/88 (43%)
Frame = +3
Query: 276 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 455
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 456 ALPEGAAPETVESRLSSDGVLTITAPRK 539
LP +++ +RL +G L A ++
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKR 173
Score = 36.7 bits (81), Expect = 0.013
Identities = 22/88 (25%), Positives = 38/88 (43%)
Frame = +3
Query: 276 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 455
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 321 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 379
Query: 456 ALPEGAAPETVESRLSSDGVLTITAPRK 539
LP +++ +RL +G L A ++
Sbjct: 380 VLPREVDMDSLTTRLDKEGKLHFEAKKR 407
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +3
Query: 297 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 473
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGV 60
Query: 474 APETVESRLSSDGVLTITAPRKVP 545
V++R+S+ G L I A + +P
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALP 84
Score = 36.7 bits (81), Expect = 0.013
Identities = 22/88 (25%), Positives = 38/88 (43%)
Frame = +3
Query: 276 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 455
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 456 ALPEGAAPETVESRLSSDGVLTITAPRK 539
LP +++ +RL +G L A ++
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKR 173
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 47.2 bits (107), Expect = 9e-06
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +3
Query: 300 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 476
+++K ++ LDV+ + PEEIS K +G + V + ++F R + LPEG
Sbjct: 4 NENKLEIAKLDVREYRPEEISFKVENGVVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVE 62
Query: 477 PETVESRLSSDGVLTITAPRKVPD 548
V++R+S+ G L I A + +P+
Sbjct: 63 ASNVKTRISNHGQLHIEAMKALPE 86
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/86 (25%), Positives = 41/86 (47%)
Frame = +3
Query: 282 GSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYAL 461
G+ ++ DKF + +DV+ F PE I V+ ++V Y + F R++ L
Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFIL 147
Query: 462 PEGAAPETVESRLSSDGVLTITAPRK 539
P +++ +RL +G L A ++
Sbjct: 148 PREVDMDSLTTRLDKEGKLHFEAKKR 173
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +3
Query: 267 ASRDLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFV 446
A+++ S+ D KF + LDV F PEE+ VK G+ + + +RQF
Sbjct: 13 ATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFN 71
Query: 447 RRYALPE 467
R + LP+
Sbjct: 72 RHFVLPQ 78
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 272 RCSRELSPWSEVVFGEHWTGDGSQHVVR 189
R SR SP + FG TGDG QH+V+
Sbjct: 100 RASRTPSPSDSIDFGAVETGDGLQHLVK 127
>SB_32739| Best HMM Match : PA (HMM E-Value=0.19)
Length = 319
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +1
Query: 214 PVQCSPKTTSDHGDNSRLHLVTSVP---A*RPTRTSSKSIWTCSTS 342
P+ P++ D R L S P A T T S S+WTCS S
Sbjct: 273 PLDLKPRSNVMRVDEGRYELKLSCPFHCAFSHTLTDSHSLWTCSNS 318
>SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)
Length = 411
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +1
Query: 142 TGPVVLLIKILDWR*PRTTCWLPSPVQCSPKTTSDHGDNSRLHLVTSVPA*RPTRTSS 315
TG + + L+ PR +C P PV SP+ + H VT P PT ++S
Sbjct: 253 TGEIEMKDLTLEIPTPRESCQFPGPVSVSPRVATTHSPPPISPRVT--PEKTPTASTS 308
>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1238
Score = 28.3 bits (60), Expect = 4.4
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 485 CGIATVIRRGSHHHRAEE 538
CG++ ++RRG +HH EE
Sbjct: 23 CGVSRILRRGYNHHLNEE 40
>SB_53052| Best HMM Match : U79_P34 (HMM E-Value=2.7)
Length = 1130
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +1
Query: 295 RPTRTSSKSIWTCSTSRRKRFR*RLPMGTSWWKASTKRRKTSTGIFQGSSSDV 453
RPT + +W + K + + +G S + ST R+ +F G+S +
Sbjct: 534 RPTPLKYRDVWRAAQVESKVWNSKENLGASLMRTSTCVRRCEDSVFGGASDAI 586
>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = -2
Query: 450 VGRTALKYTRARLSSLRACLPPRCTHRQSSPKSL 349
+ +K ++S RAC+ P C H + P ++
Sbjct: 112 ISAAEVKCVHCKVSLCRACIGPHCEHMPTQPHTI 145
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 501 TVAIPQSQAPRLQAARNVGRTALKYTRARLSSLRA 397
T +P QA RL R G +YTR +SSL A
Sbjct: 1773 TAPVPNKQA-RLTIGRQSGNAPYRYTRMYISSLYA 1806
>SB_40478| Best HMM Match : RpoE2 (HMM E-Value=1.9)
Length = 219
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +1
Query: 388 WKASTKR-RKTSTGIFQGSSSDVTRCLKAR 474
WK S +R R+T+TGI Q +S+ +T+ L+ +
Sbjct: 35 WKNSVQRARRTATGINQRNSNLITQTLREK 64
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,807,882
Number of Sequences: 59808
Number of extensions: 367213
Number of successful extensions: 1080
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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