Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10n09r
(755 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12) 135 3e-32
SB_14586| Best HMM Match : 3HCDH (HMM E-Value=0.0029) 75 5e-14
SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_19645| Best HMM Match : Smr (HMM E-Value=8.2) 30 2.3
SB_19419| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_6983| Best HMM Match : rve (HMM E-Value=0.011) 29 4.1
SB_2419| Best HMM Match : RPEL (HMM E-Value=5.8) 29 4.1
SB_4793| Best HMM Match : DUF1279 (HMM E-Value=0.31) 28 7.1
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)
Length = 120
Score = 135 bits (327), Expect = 3e-32
Identities = 58/118 (49%), Positives = 84/118 (71%), Gaps = 1/118 (0%)
Frame = -2
Query: 724 ECVPENLDLKKKVFQNLDSVVDDN-TIXXXXXXXXXXXXXSEGLKHKSQVIVSHPVNPPY 548
EC PENL+LKKKVFQNL++ + + I +E L+ + + IV+HP+NPPY
Sbjct: 1 ECTPENLELKKKVFQNLEATLSSSEVILASSTSCIMPSKFTESLQLRQRCIVAHPINPPY 60
Query: 547 YVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILDEVWRL 374
YVPLVE++PAPWT V ++T ++M++IGQ PV L +E +GF++NR+QYA++ E WRL
Sbjct: 61 YVPLVEVIPAPWTDASVIEQTIKLMKDIGQSPVLLKKETNGFIVNRLQYALIAEAWRL 118
>SB_14586| Best HMM Match : 3HCDH (HMM E-Value=0.0029)
Length = 107
Score = 75.4 bits (177), Expect = 5e-14
Identities = 38/92 (41%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Frame = -2
Query: 331 MSEGLGMRYAFLGALETAHLNAEGMQSYIDRYGETIYR-VSNEMGPAPRMTTNKSRNSVC 155
M+EGLG+RY+ +G ET HLNA+G++ Y RYG+ I+ V N P+P T + ++V
Sbjct: 13 MTEGLGLRYSLIGPFETMHLNADGIRDYCQRYGDNIHHIVKNSTIPSP--LTGATLDTVE 70
Query: 154 EQLEKLVPIEKLQDRRNWRDLCLMRLSLLKKE 59
E L + +P++KL DRR RD L L++ + +
Sbjct: 71 EDLCQTMPLDKLSDRRALRDRRLAALAVFRAQ 102
>SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 812
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/94 (24%), Positives = 42/94 (44%)
Frame = -2
Query: 751 AVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXXXXXXXXXSEGLKHKSQVIV 572
AV + + E ENL++KK VF+++ N + +E + + + +
Sbjct: 79 AVVNSGLIFEATIENLEVKKSVFKSISQFCRTNAVIATNTLALDTSVVAEHVTNPERCLG 138
Query: 571 SHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIME 470
+ P Y +P VEI T PE +K ++ +E
Sbjct: 139 IRFLYPVYSIPEVEITLGSQTSPETIQKVQQFLE 172
>SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)
Length = 346
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 140 LLQLFAHRVSAFICRHTRSRSHFIADTINCLSVSINITLHAFSIQMGCF*STQKCISHSK 319
++QL H + R+T H I T+ CLS+ + + F I+M C + C S+
Sbjct: 68 VVQLLTHGLQKTHLRYTIDNLHQIMVTLCCLSLDLRLQSIMFDIEM-CILALLDCFGESQ 126
>SB_19419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 140 LLQLFAHRVSAFICRHTRSRSHFIADTINCLSVSINITLHAFSIQMGCF*STQKCISHSK 319
++QL H + R+T H I T+ CLS+ + + F I+M C + C S+
Sbjct: 68 VVQLLTHGLQKTHLRYTIDNLHQIMVTLCCLSLDLRLQSIMFDIEM-CILALLDCFGESQ 126
>SB_6983| Best HMM Match : rve (HMM E-Value=0.011)
Length = 251
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -2
Query: 601 GLKHKSQVIVSHPVNPPYYVPLVE-IVPAPWTKPEVAKKTREIMEEIGQQPVS 446
G+ + +V P P P+ +VP+P T+PEV T +E+ Q S
Sbjct: 193 GMPNSPPQVVDIPETPAVVPPIPTLVVPSPLTQPEVESPTPSCIEQQPSQQYS 245
>SB_2419| Best HMM Match : RPEL (HMM E-Value=5.8)
Length = 116
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = -2
Query: 193 PRMTTNKSRNSVCEQLEKLVPIEKLQDRRNWRDLCLMRLSLLKK 62
P + + R+++C++LEK + E+ + R +R+L L+ LLK+
Sbjct: 70 PTSASQRRRSAICDELEKRIYCEQGANLRKFREL-LVTQRLLKE 112
>SB_4793| Best HMM Match : DUF1279 (HMM E-Value=0.31)
Length = 396
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -1
Query: 233 RDNLSCQQ*NGTGSA 189
RDNLSC++ NGTG+A
Sbjct: 317 RDNLSCRRRNGTGAA 331
>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2509
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 517 PWTKPEVAKKTREIMEEIGQQPVSLTREID 428
PW + R++ + IG+ P +L REID
Sbjct: 1831 PWLSSAEERLARKMAQPIGRDPSTLRREID 1860
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,982,738
Number of Sequences: 59808
Number of extensions: 475792
Number of successful extensions: 1189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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