Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n09r
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase, put...    62   4e-10
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP...    47   1e-05
At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat...    46   2e-05
At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille prot...    29   2.5  
At3g51620.1 68416.m05658 expressed protein                             29   4.4  
At5g52850.1 68418.m06560 pentatricopeptide (PPR) repeat-containi...    28   5.8  
At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger) fa...    28   7.7  
At1g44030.1 68414.m05079 DC1 domain-containing protein contains ...    28   7.7  

>At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase,
           putative similar to S(+)-beta-hydroxybutyryl CoA
           dehydrogenase (3-hydroxybutyryl-CoA dehydrogenase)
           [Paracoccus denitrificans] GI:12003356; contains Pfam
           profiles PF02737: 3-hydroxyacyl-CoA dehydrogenase NAD
           binding, PF00725: 3-hydroxyacyl-CoA dehydrogenase
           C-terminal
          Length = 294

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 36/120 (30%), Positives = 61/120 (50%)
 Frame = -2

Query: 739 AIFVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXXXXXXXXXSEGLKHKSQVIVSHPV 560
           A  + E + E+ D+KKK+F++LD +   + I             +   +  SQVI  H +
Sbjct: 84  ADIIVEAIVESEDIKKKLFKDLDGIAKSSAILASNTSSISITRLASATRRPSQVIGMHFM 143

Query: 559 NPPYYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILDEVW 380
           NPP  + LVEI+    T  E    T+ + E  G+  V  +++  GFV+NRI   +++E +
Sbjct: 144 NPPPIMKLVEIIRGADTSEETFLATKVLAERFGKTTV-CSQDYAGFVVNRILMPMINEAF 202


>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
           identical to fatty acid multifunctional protein (AtMFP2)
           GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
           acid beta-oxidation); contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 725

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 28/108 (25%), Positives = 53/108 (49%)
 Frame = -2

Query: 730 VQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXXXXXXXXXSEGLKHKSQVIVSHPVNPP 551
           V E V EN+ LK+++F +L+     + I              E  K + +++ +H  +P 
Sbjct: 395 VIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPA 454

Query: 550 YYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRI 407
           + +PL+EIV    T  +V     ++ ++I + PV +     GF +NR+
Sbjct: 455 HIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPV-VVGNCTGFAVNRM 501


>At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty
           acid multifunctional protein (AIM1) identical to
           gi:4337025; contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 721

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 40/171 (23%), Positives = 69/171 (40%)
 Frame = -2

Query: 730 VQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXXXXXXXXXSEGLKHKSQVIVSHPVNPP 551
           V E V EN+ LK+ +F+ ++ V   + I              E    K +++ +H  +P 
Sbjct: 392 VIEAVIENIQLKQNIFKEIEKVCSPHCILASNTSTIDLDVIGEKTNSKDRIVGAHFFSPA 451

Query: 550 YYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRIQYAILDEVWRLX 371
           + +PL+EIV +  T  +V      + + I + PV +   I GF +NR  +        L 
Sbjct: 452 HLMPLLEIVRSKNTSAQVILDLMAVGKAIKKVPVVVGNCI-GFAVNRTFFPYSQAAHMLA 510

Query: 370 XXXXXXXXXXXXVMSEGLGMRYAFLGALETAHLNAEGMQSYIDRYGETIYR 218
                       + S GL +    LG L    +       Y   YG+ ++R
Sbjct: 511 NLGVDLFRIDSVITSFGLPLGPFQLGDLAGHGIGLAVGPIYAKVYGDRMFR 561


>At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille protein
           (ZWILLE) identical to SP|Q9XGW1 PINHEAD protein (ZWILLE
           protein) {Arabidopsis thaliana}; contains Pfam profiles
           PF02171: Piwi domain, PF02170: PAZ domain
          Length = 988

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 529 IVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNR 410
           I+PAPW K     K ++ + ++GQ  +   + I+G  ++R
Sbjct: 515 ILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSR 554


>At3g51620.1 68416.m05658 expressed protein
          Length = 755

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/59 (35%), Positives = 31/59 (52%)
 Frame = -2

Query: 604 EGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREID 428
           + L+ +S   +S P+ PP   PL +  P  W + E A  TREI+E++    VS  R  D
Sbjct: 6   DDLEEESSSSLSPPLLPPPRSPLNQ--PELWMRVEEA--TREIIEQVHPTLVSEDRRRD 60


>At5g52850.1 68418.m06560 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 893

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = -2

Query: 565 PVNPPYYVPLVEIVPAPWTKPEVAKKTREIMEE------IGQQPVSLTREIDGFV 419
           P +P  Y+ L ++      KPE+A+KTR +M E      +G+  V +  ++  FV
Sbjct: 728 PSDPALYILLADLYDESG-KPELAQKTRNLMTEKRLSKKLGKSTVEVQGKVHSFV 781


>At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 161

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 571 SHPVNPPYYVPLVEIVPAPWTKPEVAKKTREIM 473
           SHP  PP  VPL   +P P  +P+   +T  +M
Sbjct: 51  SHPSLPPLPVPLPLPLPQPQPQPQQDNETGHLM 83


>At1g44030.1 68414.m05079 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 597

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 241 YQYNFACLQHSNGLFLEHPKMH 306
           Y  N AC +    LF++HPK H
Sbjct: 393 YAMNIACAEKPPVLFIDHPKWH 414


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,104,542
Number of Sequences: 28952
Number of extensions: 334942
Number of successful extensions: 935
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)