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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n09f
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    31   0.11 
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    29   0.34 
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    27   1.0  
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    27   1.0  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    27   1.4  
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    25   4.2  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   4.2  
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    25   4.2  
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    25   5.5  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   5.5  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   5.5  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    24   9.6  

>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +3

Query: 45  IMASKFKSEKIGIVGSGLIGRSWA--MLFASVGYQVTVYDVVAKQITDAIEDIKY 203
           + +S FKS KI IVG+G +G + A  +L + +  ++ + D+  K+      D+ +
Sbjct: 13  VRSSSFKSIKIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAMDLNH 67


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 29.1 bits (62), Expect = 0.34
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 57  KFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVV 164
           + + + +GI+G G IG   ++L  ++G  V  YD++
Sbjct: 192 EIRGKTLGIIGYGHIGSQLSVLAEAMGLHVVYYDIL 227


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 72  KIGIVGSGLIGRSWAMLFASVGYQVTVYD 158
           ++GI+G G +GR +A   +  G++V V D
Sbjct: 6   QVGIIGFGDMGRLYAEYISKAGWRVNVCD 34


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +3

Query: 69  EKIGIVGSGLIGRSWAMLFASVGYQVTVYD 158
           +++GI+G G IG+S+A     +G ++  ++
Sbjct: 160 KRVGIIGMGAIGKSFAQKILPLGCEIVYHN 189


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +3

Query: 30  VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYD 158
           V+ST  ++     +K+ ++G G+IG     +++ +G +VTV +
Sbjct: 205 VSSTGALSLSEVPKKMTVLGGGIIGLEMGSVWSRLGAEVTVVE 247


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 267 QCIKGSTDLETAVKGAIFVQECV 335
           QCIKG+  ++TAV+ A  +   V
Sbjct: 42  QCIKGNVPIKTAVRSATILPRMV 64


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 8/28 (28%), Positives = 21/28 (75%)
 Frame = +3

Query: 321  VQECVPENLDLKKKVFQNLDSVVDDNTI 404
            ++  +P  + L KK+F+N ++VV+++++
Sbjct: 1294 IRASLPTLICLSKKIFENAENVVENHSL 1321


>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 110 MGDVVCLSWLSGYC 151
           MG VVC  WL G C
Sbjct: 49  MGSVVCKHWLRGLC 62


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 45  IMASKFKSEKIGIVGSGLIGRSWAMLF-ASVGYQVTVYDV 161
           ++      + +G++G+G IG + A  F    G  V  YD+
Sbjct: 137 LLGCDIHGKTVGVIGTGKIGSNVAKCFKMGFGCDVLAYDI 176


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 324 QECVPENLDLKKKVFQNLDSVVDDNT 401
           + C   NLD+ K    NLDS++ D +
Sbjct: 222 KHCTSWNLDMSKSNSLNLDSIIVDTS 247


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = +3

Query: 84  VGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIK--YQLHTLENDGLLRGELKAS 257
           + +G+I  ++A+ F +  Y +T Y+ + + I    E +K  +     + D L++ + K  
Sbjct: 561 LNAGIIQAAYALCFPNTDYALTAYNDL-QYICRIFEHLKGGFMFSNKDYDFLIQLKSKVF 619

Query: 258 EQFQCIKGSTDLETAVKGAIFVQECVPEN 344
            +FQ        E   +   F+   VP +
Sbjct: 620 NRFQLSSQGLTPEDLTEDVPFLHFNVPSS 648


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +3

Query: 87  GSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKY 203
           G+G IG    +   + GY+V + D +     DA+  +++
Sbjct: 13  GAGYIGSHTVIELINHGYKVIIVDNLCNSCYDAVARVEF 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,624
Number of Sequences: 5004
Number of extensions: 39752
Number of successful extensions: 109
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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