Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10n09f
(455 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 31 0.11
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 29 0.34
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc... 27 1.0
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 27 1.0
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 27 1.4
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19... 25 4.2
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 4.2
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 25 4.2
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 25 5.5
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 25 5.5
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 25 5.5
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 24 9.6
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 30.7 bits (66), Expect = 0.11
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +3
Query: 45 IMASKFKSEKIGIVGSGLIGRSWA--MLFASVGYQVTVYDVVAKQITDAIEDIKY 203
+ +S FKS KI IVG+G +G + A +L + + ++ + D+ K+ D+ +
Sbjct: 13 VRSSSFKSIKIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAMDLNH 67
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 29.1 bits (62), Expect = 0.34
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 57 KFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVV 164
+ + + +GI+G G IG ++L ++G V YD++
Sbjct: 192 EIRGKTLGIIGYGHIGSQLSVLAEAMGLHVVYYDIL 227
>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 27.5 bits (58), Expect = 1.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 72 KIGIVGSGLIGRSWAMLFASVGYQVTVYD 158
++GI+G G +GR +A + G++V V D
Sbjct: 6 QVGIIGFGDMGRLYAEYISKAGWRVNVCD 34
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 27.5 bits (58), Expect = 1.0
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +3
Query: 69 EKIGIVGSGLIGRSWAMLFASVGYQVTVYD 158
+++GI+G G IG+S+A +G ++ ++
Sbjct: 160 KRVGIIGMGAIGKSFAQKILPLGCEIVYHN 189
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +3
Query: 30 VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYD 158
V+ST ++ +K+ ++G G+IG +++ +G +VTV +
Sbjct: 205 VSSTGALSLSEVPKKMTVLGGGIIGLEMGSVWSRLGAEVTVVE 247
>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
S19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 25.4 bits (53), Expect = 4.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 267 QCIKGSTDLETAVKGAIFVQECV 335
QCIKG+ ++TAV+ A + V
Sbjct: 42 QCIKGNVPIKTAVRSATILPRMV 64
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.4 bits (53), Expect = 4.2
Identities = 8/28 (28%), Positives = 21/28 (75%)
Frame = +3
Query: 321 VQECVPENLDLKKKVFQNLDSVVDDNTI 404
++ +P + L KK+F+N ++VV+++++
Sbjct: 1294 IRASLPTLICLSKKIFENAENVVENHSL 1321
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 25.4 bits (53), Expect = 4.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 110 MGDVVCLSWLSGYC 151
MG VVC WL G C
Sbjct: 49 MGSVVCKHWLRGLC 62
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 25.0 bits (52), Expect = 5.5
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 45 IMASKFKSEKIGIVGSGLIGRSWAMLF-ASVGYQVTVYDV 161
++ + +G++G+G IG + A F G V YD+
Sbjct: 137 LLGCDIHGKTVGVIGTGKIGSNVAKCFKMGFGCDVLAYDI 176
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.0 bits (52), Expect = 5.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 324 QECVPENLDLKKKVFQNLDSVVDDNT 401
+ C NLD+ K NLDS++ D +
Sbjct: 222 KHCTSWNLDMSKSNSLNLDSIIVDTS 247
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.0 bits (52), Expect = 5.5
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +3
Query: 84 VGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIK--YQLHTLENDGLLRGELKAS 257
+ +G+I ++A+ F + Y +T Y+ + + I E +K + + D L++ + K
Sbjct: 561 LNAGIIQAAYALCFPNTDYALTAYNDL-QYICRIFEHLKGGFMFSNKDYDFLIQLKSKVF 619
Query: 258 EQFQCIKGSTDLETAVKGAIFVQECVPEN 344
+FQ E + F+ VP +
Sbjct: 620 NRFQLSSQGLTPEDLTEDVPFLHFNVPSS 648
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 24.2 bits (50), Expect = 9.6
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = +3
Query: 87 GSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKY 203
G+G IG + + GY+V + D + DA+ +++
Sbjct: 13 GAGYIGSHTVIELINHGYKVIIVDNLCNSCYDAVARVEF 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,624
Number of Sequences: 5004
Number of extensions: 39752
Number of successful extensions: 109
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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