Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10n09f
(455 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 49 2e-06
06_01_0080 + 644021-645463 30 0.77
05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571 29 1.3
04_03_0515 + 16698589-16701066 29 1.8
01_06_0663 - 30991390-30992340 29 2.3
11_06_0703 + 26444128-26446215,26446525-26447226 27 5.4
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 27 5.4
02_04_0573 + 23985468-23987054 27 5.4
11_04_0333 + 16474011-16475478,16475622-16475641 27 7.2
03_01_0633 - 4649267-4649383,4649480-4649641,4649735-4649895,465... 27 7.2
07_03_1057 + 23624454-23624954,23625582-23625971 27 9.5
05_04_0155 + 18595193-18596224,18596863-18597264 27 9.5
03_01_0439 + 3409422-3409795,3410672-3410897,3411004-3411282,341... 27 9.5
01_01_0325 + 2631637-2631882,2632715-2632788,2632874-2633006,263... 27 9.5
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 49.2 bits (112), Expect = 2e-06
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Frame = +3
Query: 75 IGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDG-LLRGELK 251
+G++G+G +G A L A+ G V + D ++ A++ I L L G L + +
Sbjct: 13 VGVIGAGQMGSGIAQLAAAAGCGVLLLDSDTAALSRAVDSISSSLRRLVAKGQLSQASCE 72
Query: 252 AS-EQFQCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTI 404
S EQ +C+ +L + A V E + E+ D+KKK+F LD + + I
Sbjct: 73 HSIEQIKCVSSVQEL----RDADLVIEAIVESEDIKKKLFVELDKITKPSAI 120
>06_01_0080 + 644021-645463
Length = 480
Score = 30.3 bits (65), Expect = 0.77
Identities = 10/45 (22%), Positives = 27/45 (60%)
Frame = +3
Query: 72 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 206
+IG+ G ++G++ A+ A G+ ++VY+ ++ + ++ K +
Sbjct: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVE 49
>05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571
Length = 527
Score = 29.5 bits (63), Expect = 1.3
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Frame = +3
Query: 30 VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQL 209
V+ST +A +K+ ++G+G IG ++ +G +VTV + + + +I+ Q
Sbjct: 222 VSSTGALALSEIPKKLVVIGAGYIGLEMGSVWNRLGSEVTVVEFASDIVPSMDGEIRKQF 281
Query: 210 HTLENDGLLRGELKASEQFQCIKGS---TDLETAVKGAIFVQEC 332
+ ++ LK GS +E A G V EC
Sbjct: 282 QRMLEKQKMKFMLKTKVVGVDTSGSGVKLTVEPAAGGEQSVLEC 325
>04_03_0515 + 16698589-16701066
Length = 825
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 423 YLLNLIISCYRQLRCRDSGTPFF 355
Y N++I+CYR+ R D G P F
Sbjct: 190 YTYNILINCYRRARRPDLGLPVF 212
>01_06_0663 - 30991390-30992340
Length = 316
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 72 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQ 173
++ VG+G++G+S A + GY +TVY+ A +
Sbjct: 21 RVAWVGTGVMGQSMAGHLLAAGYALTVYNRTASK 54
>11_06_0703 + 26444128-26446215,26446525-26447226
Length = 929
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 15 LSCGTVASTVIMASKFKSEKIGIVGSGLIGRS 110
L+C + VI + K K+GIVG+G +G++
Sbjct: 174 LACRELVDLVIENKEKKDYKLGIVGTGGVGKT 205
>04_04_0214 -
23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +3
Query: 72 KIGIVGSGLIGRSWAMLFASVGYQ-VTVYD 158
+IGIVG+G G S A A +GY+ VT+++
Sbjct: 23 RIGIVGAGPSGLSAAYALAKLGYRNVTLFE 52
>02_04_0573 + 23985468-23987054
Length = 528
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -2
Query: 448 SENNDGKVVLVELDNIVLSSTTLSRFWNTFFLRS-RFSGTHS*TNIAPLTAVSR 290
S + G+V + L + LS T S N FL++ FS H + PL + R
Sbjct: 68 SRRHPGRVTALNLFKLSLSGTISSSLGNLTFLKALNFSSNHFSGKLPPLNHLHR 121
>11_04_0333 + 16474011-16475478,16475622-16475641
Length = 495
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 72 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQI 176
+IG+ G +G++ A+ A G+ ++VY+ A ++
Sbjct: 23 RIGLAGLATMGQNLALNIAEKGFPISVYNRTAAKV 57
>03_01_0633 -
4649267-4649383,4649480-4649641,4649735-4649895,
4650056-4650080,4650155-4650237,4650332-4650704
Length = 306
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 100 IKPLPTIPIFSDLNLDAMITVDATVPHDKPL 8
+KP IPI +D L+ + +D + H+ PL
Sbjct: 252 VKPKQDIPILADKYLNKELELDKFITHEVPL 282
>07_03_1057 + 23624454-23624954,23625582-23625971
Length = 296
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 331 HS*TNIAPLTAVSRSVDPFIH*NCSLALSSPRNRPS 224
HS T P A+ R DP + + PRNRPS
Sbjct: 238 HSVTRGVPPAALKRIRDPELRAFIERCIGQPRNRPS 273
>05_04_0155 + 18595193-18596224,18596863-18597264
Length = 477
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 54 SKFKSEKIGIVGS-GLIGRSWAMLFASVGYQVTVYDVVAKQITD 182
S K +K+ ++G G G + A+ ++ GY+V + D + +++ D
Sbjct: 80 SSSKPKKVMVIGGDGYCGWATALHLSNKGYEVAIVDNLVRRLFD 123
>03_01_0439 +
3409422-3409795,3410672-3410897,3411004-3411282,
3411374-3411550,3411653-3411706,3411806-3411954,
3412534-3412597,3412670-3412840,3412922-3413059,
3413180-3413215
Length = 555
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 63 KSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIK 200
K EKI IVG G I +A +F + +V V+ K + E+++
Sbjct: 250 KPEKIAIVGGGYIALEFAGIFNGLKSEVHVFIRQKKVLRGFDEEVR 295
>01_01_0325 +
2631637-2631882,2632715-2632788,2632874-2633006,
2633091-2633172,2633471-2633580,2633659-2633751,
2633854-2633904,2634013-2634105,2635257-2636129,
2636204-2636316,2636436-2636448
Length = 626
Score = 26.6 bits (56), Expect = 9.5
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +3
Query: 243 ELKASEQFQCIKGSTDLETAVKGAIFVQECVPENL-----DLKKKVFQNLDSVVDDNTI 404
E+ A E+ + I + VK FV E +P +L DLK+ + L+SV+D +++
Sbjct: 426 EVIAYEEDEAINNVLQVVELVKSC-FVGEMIPADLQGDLHDLKENPLKRLESVIDSSSL 483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,215,221
Number of Sequences: 37544
Number of extensions: 247852
Number of successful extensions: 636
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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