Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10n09f
(455 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04
SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12) 40 0.001
SB_8863| Best HMM Match : DAO (HMM E-Value=0.04) 32 0.20
SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06) 31 0.34
SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_29581| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17) 29 1.8
SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_54640| Best HMM Match : TolA (HMM E-Value=1.7) 28 3.2
SB_57235| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38) 27 5.6
SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094) 27 5.6
SB_4519| Best HMM Match : ZU5 (HMM E-Value=0.28) 27 5.6
SB_50723| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 812
Score = 42.7 bits (96), Expect = 1e-04
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Frame = +3
Query: 75 IGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRGELKA 254
+ ++G+GL+G A A G +V +YD A+ A+E K L + + L R E+ A
Sbjct: 8 VAVIGAGLMGTCIAGELAYHGARVNLYDRSAQ----AMEKSKEML-IQQKEQLKREEVMA 62
Query: 255 SEQF-QCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTI 404
+ F + LE AV + + E ENL++KK VF+++ N +
Sbjct: 63 TSDFIGTVAFCESLEEAVVNSGLIFEATIENLEVKKSVFKSISQFCRTNAV 113
>SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)
Length = 120
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +3
Query: 327 ECVPENLDLKKKVFQNLDSVVDDNTI 404
EC PENL+LKKKVFQNL++ + + +
Sbjct: 1 ECTPENLELKKKVFQNLEATLSSSEV 26
>SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)
Length = 485
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 72 KIGIVGSGLIGRSWAMLFASVGYQVTVYD 158
++ IVG GL+G A+ FA GY+V +Y+
Sbjct: 165 EVAIVGGGLVGALSAVFFAKRGYKVDLYE 193
>SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06)
Length = 456
Score = 31.5 bits (68), Expect = 0.34
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +3
Query: 48 MASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTV 152
++S F +++ ++G+G+IG + A + GY+VTV
Sbjct: 13 LSSPFGGQRVLVIGAGVIGLTTAYELLTAGYEVTV 47
>SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 72 KIGIVGSGLIGRSWAMLFASVGYQVTVYD 158
K+GIVGSG+ G S A L G +V +Y+
Sbjct: 2 KVGIVGSGIAGLSAAWLLTLRGNEVHLYE 30
>SB_29581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 29.5 bits (63), Expect = 1.4
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = -1
Query: 326 LNKYSSFNCGFQIRRPFYTLKLFASFELAS*QTIVFKGMQLVFDVLNGIGNLFCDYIIYS 147
+++Y C +I P KL A+ E A I+ KG VFD L GN+ IY
Sbjct: 22 MSQYGRLFCSTRIPHPGKD-KL-ATHEGARHMLIMHKGKFFVFDTLTTDGNIVSTSTIYE 79
Query: 146 NL 141
NL
Sbjct: 80 NL 81
>SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
Length = 765
Score = 29.1 bits (62), Expect = 1.8
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +3
Query: 174 ITDAIEDIKYQLHTLENDGLLRGELKASEQFQCIKGSTDLETAVKGAIFVQECVPENLD- 350
+ AIE + EN L+ GE+ S+ + T L VK I V E+L
Sbjct: 105 LAQAIERCRMNEMRKENRDLVLGEINKSDSMRICVDLTQLNEGVKWEIQPMPSVDESLSK 164
Query: 351 -LKKKVFQNLDS 383
+ KVF LD+
Sbjct: 165 LSQGKVFSKLDA 176
>SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 89 SNDPDLFRLEFRCHDYCRCDRTARQTSRE 3
S D RLE CH C CD+ + SR+
Sbjct: 79 SKQSDKARLEKMCHPLCSCDKCEKLLSRK 107
>SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)
Length = 589
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 99 IGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 206
+GR W + ++ +QV D V KQ A++D Y+
Sbjct: 1 MGRLWILAIPAIIWQVCTTDAVRKQQLRAVDDETYK 36
>SB_57235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 294 ETAVKGAIFVQECVPENLDLKKKVFQNLDS 383
++A +G V++C+ N D+K K + LDS
Sbjct: 20 QSATRGLALVKDCLMANTDVKGKGIKRLDS 49
>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
Length = 451
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 87 GSGLIGRSWAMLFASVGYQVTVYD 158
G+G +G S + GY+VTVYD
Sbjct: 148 GAGYLGSSLVPILLDQGYKVTVYD 171
>SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094)
Length = 332
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 90 SGLIGRSWAMLFASVGYQVTVYDVVAK--QITDAIEDIKYQ 206
S L+G+SW L S G Q+ D + K Q+ I+ I YQ
Sbjct: 173 SRLLGQSWNQLALSTGTQLMESDAMIKFGQLCWEIQSIMYQ 213
>SB_4519| Best HMM Match : ZU5 (HMM E-Value=0.28)
Length = 403
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 240 GELKASEQFQCIKGSTDLETAVKGAIFVQECV 335
G LK S + QC++ S + +V G +FV V
Sbjct: 125 GALKQSVEIQCVRHSPTVFPSVDGEVFVSHIV 156
>SB_50723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 26.6 bits (56), Expect = 9.7
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -1
Query: 341 LWNTFLNKYSSFNCGFQIRRPFYTLKLFAS 252
+WN +++K NC F + P Y + S
Sbjct: 110 VWNRYMDKLPERNCWFAVLEPAYITLFYQS 139
>SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 273 IKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLD 380
+K S D+ +V A V E + ENL K K+F LD
Sbjct: 13 LKISLDVPGSVADADLVIEAIVENLRTKHKLFTALD 48
>SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 63 KSEKIGIVGSGLIGRSWAMLFASVGYQVTVYD 158
KS K+ IVGSG+ G A S G VT+ +
Sbjct: 249 KSPKVIIVGSGIAGLMAARQLQSFGIDVTMVE 280
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,388,935
Number of Sequences: 59808
Number of extensions: 287101
Number of successful extensions: 725
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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