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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n09f
         (455 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase, put...    49   2e-06
At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase NAD-bi...    36   0.013
At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase, pu...    31   0.37 
At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family...    31   0.37 
At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family...    31   0.37 
At3g04870.2 68416.m00529 zeta-carotene desaturase (ZDS1) / carot...    31   0.49 
At3g04870.1 68416.m00528 zeta-carotene desaturase (ZDS1) / carot...    31   0.49 
At1g56000.1 68414.m06425 amine oxidase-related contains Pfam pro...    29   1.5  
At1g55980.1 68414.m06421 expressed protein                             29   1.5  
At5g41670.2 68418.m05063 6-phosphogluconate dehydrogenase family...    29   2.0  
At5g41670.1 68418.m05062 6-phosphogluconate dehydrogenase family...    29   2.0  
At1g64190.1 68414.m07272 6-phosphogluconate dehydrogenase family...    29   2.0  
At3g19450.1 68416.m02466 cinnamyl-alcohol dehydrogenase (CAD) id...    28   2.6  
At5g45150.1 68418.m05543 ribonuclease III family protein similar...    28   3.4  
At1g71180.1 68414.m08213 6-phosphogluconate dehydrogenase NAD-bi...    28   3.4  
At1g71170.1 68414.m08212 6-phosphogluconate dehydrogenase NAD-bi...    28   3.4  
At3g54660.1 68416.m06048 gluthatione reductase, chloroplast near...    27   4.5  
At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,...    27   6.0  
At4g14820.1 68417.m02279 pentatricopeptide (PPR) repeat-containi...    27   6.0  
At3g17240.3 68416.m02203 dihydrolipoamide dehydrogenase 2, mitoc...    27   6.0  
At3g17240.1 68416.m02202 dihydrolipoamide dehydrogenase 2, mitoc...    27   6.0  
At1g79530.1 68414.m09271 glyceraldehyde 3-phosphate dehydrogenas...    27   6.0  
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con...    27   6.0  
At1g48030.2 68414.m05351 dihydrolipoamide dehydrogenase 1, mitoc...    27   6.0  
At1g48030.1 68414.m05350 dihydrolipoamide dehydrogenase 1, mitoc...    27   6.0  
At5g08070.1 68418.m00941 TCP family transcription factor, putati...    27   7.9  

>At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase,
           putative similar to S(+)-beta-hydroxybutyryl CoA
           dehydrogenase (3-hydroxybutyryl-CoA dehydrogenase)
           [Paracoccus denitrificans] GI:12003356; contains Pfam
           profiles PF02737: 3-hydroxyacyl-CoA dehydrogenase NAD
           binding, PF00725: 3-hydroxyacyl-CoA dehydrogenase
           C-terminal
          Length = 294

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 30/112 (26%), Positives = 57/112 (50%)
 Frame = +3

Query: 69  EKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRGEL 248
           + +G+VG+G +G   A L A+ G  V + D     ++ A   I   +    + GL+  E+
Sbjct: 5   KSVGVVGAGQMGSGIAQLAATSGLDVWLMDADRDALSRATAAISSSVKRFVSKGLISKEV 64

Query: 249 KASEQFQCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTI 404
              +    ++ +++LE      I V E + E+ D+KKK+F++LD +   + I
Sbjct: 65  -GDDAMHRLRLTSNLEDLCSADIIV-EAIVESEDIKKKLFKDLDGIAKSSAI 114


>At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase
           NAD-binding domain-containing protein similar to
           SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
           1.1.1.60) (Tartronate semialdehyde reductase)
           {Escherichia coli}; contains Pfam profile PF03446: NAD
           binding domain of 6-phosphogluconate dehydrogenase
          Length = 334

 Score = 35.9 bits (79), Expect = 0.013
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = +3

Query: 9   RGLSCGTVASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYD 158
           R ++  T++S +I  S   + KIG +G+G++GRS        GY VTV++
Sbjct: 21  RSMASSTISSDIITPS---NTKIGWIGTGVMGRSMCGHLIKAGYTVTVFN 67


>At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase,
           putative similar to cytosine-5 methyltransferase (METII)
           [Arabidopsis thaliana] GI:6523846; contains Pfam
           profiles PF01426: BAH domain, PF00145: C-5
           cytosine-specific DNA methylase
          Length = 1404

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
 Frame = +3

Query: 96  LIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRG-ELKASEQFQC 272
           LI R W   ++    +  + ++ A++  + +ED++ +    E D + +  E++ ++  + 
Sbjct: 520 LINRIWGEFYSIYSPEDPLEEIGAEEEFEEVEDVEEEDENEEEDTIQKAIEVQKADTLKK 579

Query: 273 IKGS-TDLETAVKGAIFVQECVPENL 347
           I+GS  ++E   +G I  + C  E L
Sbjct: 580 IRGSCKEMEIRWEGEILGETCAGEPL 605


>At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family
           protein contains Pfam profiles: PF00393
           6-phosphogluconate dehydrogenase C-terminal domain,
           PF03446 NAD binding domain of 6-phosphogluconate
           ;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
           GI:2529229 [Glycine max]
          Length = 486

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = +3

Query: 72  KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIK 200
           +IG+ G  ++G++ A+  A  G+ ++VY+    ++ + +E  K
Sbjct: 7   RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK 49


>At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family
           protein contains Pfam profiles: PF00393
           6-phosphogluconate dehydrogenase C-terminal domain,
           PF03446 NAD binding domain of 6-phosphogluconate
           ;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
           GI:2529229 [Glycine max]
          Length = 486

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = +3

Query: 72  KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIK 200
           +IG+ G  ++G++ A+  A  G+ ++VY+    ++ + +E  K
Sbjct: 7   RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK 49


>At3g04870.2 68416.m00529 zeta-carotene desaturase (ZDS1) / carotene
           7,8-desaturase identical to SP|Q38893 Zeta-carotene
           desaturase, chloroplast precursor (EC 1.14.99.30)
           (Carotene 7,8-desaturase) {Arabidopsis thaliana}
          Length = 558

 Score = 30.7 bits (66), Expect = 0.49
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 72  KIGIVGSGLIGRSWAMLFASVGYQVTVYD 158
           K+ I+G+GL G S A+     G++V +YD
Sbjct: 58  KVAIIGAGLAGMSTAVELLDQGHEVDIYD 86


>At3g04870.1 68416.m00528 zeta-carotene desaturase (ZDS1) / carotene
           7,8-desaturase identical to SP|Q38893 Zeta-carotene
           desaturase, chloroplast precursor (EC 1.14.99.30)
           (Carotene 7,8-desaturase) {Arabidopsis thaliana}
          Length = 558

 Score = 30.7 bits (66), Expect = 0.49
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 72  KIGIVGSGLIGRSWAMLFASVGYQVTVYD 158
           K+ I+G+GL G S A+     G++V +YD
Sbjct: 58  KVAIIGAGLAGMSTAVELLDQGHEVDIYD 86


>At1g56000.1 68414.m06425 amine oxidase-related contains Pfam
           profile PF01593: amine oxidase, flavin-containing
          Length = 384

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 48  MASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYD 158
           M+S   + K+ ++GSG+ G   A   A  G  VT++D
Sbjct: 14  MSSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFD 50


>At1g55980.1 68414.m06421 expressed protein
          Length = 464

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 48  MASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYD 158
           M+S   + K+ ++GSG+ G   A   A  G  VT++D
Sbjct: 152 MSSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFD 188


>At5g41670.2 68418.m05063 6-phosphogluconate dehydrogenase family
           protein contains Pfam profiles: PF00393
           6-phosphogluconate dehydrogenase C-terminal domain,
           PF03446 NAD binding domain of 6-phosphogluconate
          Length = 487

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 9/40 (22%), Positives = 25/40 (62%)
 Frame = +3

Query: 72  KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIE 191
           +IG+ G  ++G++ A+  A  G+ ++VY+    ++ + ++
Sbjct: 8   RIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLD 47


>At5g41670.1 68418.m05062 6-phosphogluconate dehydrogenase family
           protein contains Pfam profiles: PF00393
           6-phosphogluconate dehydrogenase C-terminal domain,
           PF03446 NAD binding domain of 6-phosphogluconate
          Length = 487

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 9/40 (22%), Positives = 25/40 (62%)
 Frame = +3

Query: 72  KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIE 191
           +IG+ G  ++G++ A+  A  G+ ++VY+    ++ + ++
Sbjct: 8   RIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLD 47


>At1g64190.1 68414.m07272 6-phosphogluconate dehydrogenase family
           protein contains Pfam profiles: PF00393
           6-phosphogluconate dehydrogenase C-terminal domain,
           PF03446 NAD binding domain of 6-phosphogluconate
          Length = 487

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 9/40 (22%), Positives = 25/40 (62%)
 Frame = +3

Query: 72  KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIE 191
           +IG+ G  ++G++ A+  A  G+ ++VY+    ++ + ++
Sbjct: 8   RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLD 47


>At3g19450.1 68416.m02466 cinnamyl-alcohol dehydrogenase (CAD)
           identical to SP|P48523 Cinnamyl-alcohol dehydrogenase
           (EC 1.1.1.195) (CAD) [Arabidopsis thaliana]
          Length = 365

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +3

Query: 45  IMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLEN 224
           +MAS  K    GI+G G +G     +  ++G+ VTV     K+  +AIE +    + + +
Sbjct: 178 LMASGLKG---GILGLGGVGHMGVKIAKAMGHHVTVISSSDKKKEEAIEHLGADDYVVSS 234

Query: 225 D 227
           D
Sbjct: 235 D 235


>At5g45150.1 68418.m05543 ribonuclease III family protein similar to
            CAF protein (RNA helicase/RNAseIII) [Arabidopsis
            thaliana] GI:6102610; contains Pfam profiles PF00035:
            Double-stranded RNA binding motif, PF00636 RNase3 domain
          Length = 957

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
 Frame = +3

Query: 195  IKYQLHTLENDGLLRGELKASEQFQCIKGSTD-----LETAVKGAIFVQECVPENLDLKK 359
            +K ++  +E    ++G+ K +++ +    S D     LE++V   +     + ENLD KK
Sbjct: 874  VKIEIPNIEGTFHIKGDAKPTKK-EAENSSADHMIRALESSVMSLVITNLQMHENLDGKK 932

Query: 360  KVFQNLDSVVDDNTI 404
            K  Q  +S+ ++ T+
Sbjct: 933  KNLQMKESLNENKTL 947


>At1g71180.1 68414.m08213 6-phosphogluconate dehydrogenase
           NAD-binding domain-containing protein similar to
           SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
           1.1.1.60) (Tartronate semialdehyde reductase)
           {Escherichia coli}; contains Pfam profile PF03446: NAD
           binding domain of 6-phosphogluconate dehydrogenase
          Length = 318

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 72  KIGIVGSGLIGRSWAMLFASVGYQVTVY 155
           +IG +G G++G +      + GY VTVY
Sbjct: 36  RIGWIGIGIMGSAMVSHIIAAGYSVTVY 63


>At1g71170.1 68414.m08212 6-phosphogluconate dehydrogenase
           NAD-binding domain-containing protein contains Pfam
           profile: PF03446 NAD binding domain of
           6-phosphogluconate
          Length = 299

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 72  KIGIVGSGLIGRSWAMLFASVGYQVTVY 155
           +IG +G G++G +      + GY VTVY
Sbjct: 15  RIGWIGIGIMGSAMVSHILAAGYSVTVY 42


>At3g54660.1 68416.m06048 gluthatione reductase, chloroplast nearly
           identical to SP|P42770 Glutathione reductase,
           chloroplast precursor (EC 1.8.1.7) (GR) (GRASE)
           {Arabidopsis thaliana};  identical to cDNA glutathione
           reductase GI:451197
          Length = 565

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 63  KSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIK 200
           K +KI IVG G I   +A +F  +  +V V+    K +    ED++
Sbjct: 259 KPKKIAIVGGGYIALEFAGIFNGLNCEVHVFIRQKKVLRGFDEDVR 304


>At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,
            putative similar to SP|Q03460 Glutamate synthase [NADH],
            chloroplast precursor (EC 1.4.1.14) (NADH- GOGAT)
            {Medicago sativa}
          Length = 2208

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 57   KFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYD 158
            K   +K+ I+GSG  G + A     +G+ VTVY+
Sbjct: 1842 KRTGKKVAIIGSGPAGLAAADQLNKMGHLVTVYE 1875


>At4g14820.1 68417.m02279 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 722

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 392 VNYAVEILEHLFFKVKILWNTFLNKYSSF 306
           +NYA  + + +  +  + WNT + +Y  F
Sbjct: 162 INYARNVFDEMSHRDVVTWNTMIERYCRF 190


>At3g17240.3 68416.m02203 dihydrolipoamide dehydrogenase 2,
           mitochondrial / lipoamide dehydrogenase 2 (MTLPD2)
           nearly identical to GB:AAF34796 [gi:6984216] from
           [Arabidopsis thaliana]; alternative splice form exists
          Length = 507

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = +3

Query: 30  VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 206
           V+ST  ++     +K+ ++G+G IG     ++  +G +VTV +  A  +     +I+ Q
Sbjct: 202 VSSTGALSLTEIPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAADIVPAMDGEIRKQ 260


>At3g17240.1 68416.m02202 dihydrolipoamide dehydrogenase 2,
           mitochondrial / lipoamide dehydrogenase 2 (MTLPD2)
           nearly identical to GB:AAF34796 [gi:6984216] from
           [Arabidopsis thaliana]; alternative splice form exists
          Length = 507

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = +3

Query: 30  VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 206
           V+ST  ++     +K+ ++G+G IG     ++  +G +VTV +  A  +     +I+ Q
Sbjct: 202 VSSTGALSLTEIPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAADIVPAMDGEIRKQ 260


>At1g79530.1 68414.m09271 glyceraldehyde 3-phosphate dehydrogenase,
           cytosolic, putative / NAD-dependent
           glyceraldehyde-3-phosphate dehydrogenase, putative
           similar to glyceraldehyde-3-phosphate dehydrogenase
           [Pinus sylvestris] GI:1100223; contains Pfam profiles
           PF02800: Glyceraldehyde 3-phosphate dehydrogenase
           C-terminal domain, PF00044: Glyceraldehyde 3-phosphate
           dehydrogenase NAD binding domain
          Length = 422

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 25/76 (32%), Positives = 32/76 (42%)
 Frame = +3

Query: 30  VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQL 209
           V S V  +S     K+GI G G IGR    L   +       +VVA  + D   D KY  
Sbjct: 74  VPSAVRRSSSSGKTKVGINGFGRIGR----LVLRIATSRDDIEVVA--VNDPFIDAKYMA 127

Query: 210 HTLENDGLLRGELKAS 257
           + L+ D    G  K S
Sbjct: 128 YMLKYDS-THGNFKGS 142


>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
           contains similarity to 30S ribosomal protein S5
           GI:6969105 from [Campylobacter jejuni]
          Length = 515

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 6   TRGLSCGTVASTVIMASKFKSEKIGIVGS 92
           T G+  G V  T+++ + FK+ K  ++GS
Sbjct: 450 TTGMKAGRVVKTILLLAGFKNIKSKVIGS 478


>At1g48030.2 68414.m05351 dihydrolipoamide dehydrogenase 1,
           mitochondrial / lipoamide dehydrogenase 1 (MTLPD1)
           identical to GB:AAF34795 [gi:12704696] from [Arabidopsis
           thaliana]
          Length = 507

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +3

Query: 30  VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 206
           V+ST  ++     +K+ ++G+G IG     ++  +G +VTV +     +     +I+ Q
Sbjct: 202 VSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAGDIVPSMDGEIRKQ 260


>At1g48030.1 68414.m05350 dihydrolipoamide dehydrogenase 1,
           mitochondrial / lipoamide dehydrogenase 1 (MTLPD1)
           identical to GB:AAF34795 [gi:12704696] from [Arabidopsis
           thaliana]
          Length = 507

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +3

Query: 30  VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 206
           V+ST  ++     +K+ ++G+G IG     ++  +G +VTV +     +     +I+ Q
Sbjct: 202 VSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAGDIVPSMDGEIRKQ 260


>At5g08070.1 68418.m00941 TCP family transcription factor, putative
           similar to TFPD (GI:6681577) [Arabidopsis thaliana] ;
           putative basic helix-loop-helix DNA binding protein TCP2
           - Arabidopsis thaliana, EMBL:AF072691
          Length = 242

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = +3

Query: 129 SVGYQVTVYDVVAKQ-ITDAIEDIKYQLHTLENDGLLRGELKASEQFQCIKGS-TDLETA 302
           SV   + VYD+  +  ++   + I + L   +ND  L   L+    F  +  + T L  +
Sbjct: 54  SVMTAIQVYDLQERLGLSQPSKVIDWLLEVAKNDVDLLPPLQFPPGFHQLNPNLTGLGES 113

Query: 303 VKGAIFVQECVPENLDLKKKVFQNLDSVVD 392
             G   +     E LDL+K+ + NLD V D
Sbjct: 114 FPGVFDLGRTQREALDLEKRKWVNLDHVFD 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,060,064
Number of Sequences: 28952
Number of extensions: 207902
Number of successful extensions: 639
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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