BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10n09f (455 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase, put... 49 2e-06 At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase NAD-bi... 36 0.013 At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase, pu... 31 0.37 At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family... 31 0.37 At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family... 31 0.37 At3g04870.2 68416.m00529 zeta-carotene desaturase (ZDS1) / carot... 31 0.49 At3g04870.1 68416.m00528 zeta-carotene desaturase (ZDS1) / carot... 31 0.49 At1g56000.1 68414.m06425 amine oxidase-related contains Pfam pro... 29 1.5 At1g55980.1 68414.m06421 expressed protein 29 1.5 At5g41670.2 68418.m05063 6-phosphogluconate dehydrogenase family... 29 2.0 At5g41670.1 68418.m05062 6-phosphogluconate dehydrogenase family... 29 2.0 At1g64190.1 68414.m07272 6-phosphogluconate dehydrogenase family... 29 2.0 At3g19450.1 68416.m02466 cinnamyl-alcohol dehydrogenase (CAD) id... 28 2.6 At5g45150.1 68418.m05543 ribonuclease III family protein similar... 28 3.4 At1g71180.1 68414.m08213 6-phosphogluconate dehydrogenase NAD-bi... 28 3.4 At1g71170.1 68414.m08212 6-phosphogluconate dehydrogenase NAD-bi... 28 3.4 At3g54660.1 68416.m06048 gluthatione reductase, chloroplast near... 27 4.5 At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,... 27 6.0 At4g14820.1 68417.m02279 pentatricopeptide (PPR) repeat-containi... 27 6.0 At3g17240.3 68416.m02203 dihydrolipoamide dehydrogenase 2, mitoc... 27 6.0 At3g17240.1 68416.m02202 dihydrolipoamide dehydrogenase 2, mitoc... 27 6.0 At1g79530.1 68414.m09271 glyceraldehyde 3-phosphate dehydrogenas... 27 6.0 At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 27 6.0 At1g48030.2 68414.m05351 dihydrolipoamide dehydrogenase 1, mitoc... 27 6.0 At1g48030.1 68414.m05350 dihydrolipoamide dehydrogenase 1, mitoc... 27 6.0 At5g08070.1 68418.m00941 TCP family transcription factor, putati... 27 7.9 >At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase, putative similar to S(+)-beta-hydroxybutyryl CoA dehydrogenase (3-hydroxybutyryl-CoA dehydrogenase) [Paracoccus denitrificans] GI:12003356; contains Pfam profiles PF02737: 3-hydroxyacyl-CoA dehydrogenase NAD binding, PF00725: 3-hydroxyacyl-CoA dehydrogenase C-terminal Length = 294 Score = 48.8 bits (111), Expect = 2e-06 Identities = 30/112 (26%), Positives = 57/112 (50%) Frame = +3 Query: 69 EKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRGEL 248 + +G+VG+G +G A L A+ G V + D ++ A I + + GL+ E+ Sbjct: 5 KSVGVVGAGQMGSGIAQLAATSGLDVWLMDADRDALSRATAAISSSVKRFVSKGLISKEV 64 Query: 249 KASEQFQCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTI 404 + ++ +++LE I V E + E+ D+KKK+F++LD + + I Sbjct: 65 -GDDAMHRLRLTSNLEDLCSADIIV-EAIVESEDIKKKLFKDLDGIAKSSAI 114 >At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein similar to SP|P23523 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) (Tartronate semialdehyde reductase) {Escherichia coli}; contains Pfam profile PF03446: NAD binding domain of 6-phosphogluconate dehydrogenase Length = 334 Score = 35.9 bits (79), Expect = 0.013 Identities = 18/50 (36%), Positives = 30/50 (60%) Frame = +3 Query: 9 RGLSCGTVASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYD 158 R ++ T++S +I S + KIG +G+G++GRS GY VTV++ Sbjct: 21 RSMASSTISSDIITPS---NTKIGWIGTGVMGRSMCGHLIKAGYTVTVFN 67 >At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase, putative similar to cytosine-5 methyltransferase (METII) [Arabidopsis thaliana] GI:6523846; contains Pfam profiles PF01426: BAH domain, PF00145: C-5 cytosine-specific DNA methylase Length = 1404 Score = 31.1 bits (67), Expect = 0.37 Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Frame = +3 Query: 96 LIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRG-ELKASEQFQC 272 LI R W ++ + + ++ A++ + +ED++ + E D + + E++ ++ + Sbjct: 520 LINRIWGEFYSIYSPEDPLEEIGAEEEFEEVEDVEEEDENEEEDTIQKAIEVQKADTLKK 579 Query: 273 IKGS-TDLETAVKGAIFVQECVPENL 347 I+GS ++E +G I + C E L Sbjct: 580 IRGSCKEMEIRWEGEILGETCAGEPL 605 >At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family protein contains Pfam profiles: PF00393 6-phosphogluconate dehydrogenase C-terminal domain, PF03446 NAD binding domain of 6-phosphogluconate ;similar to 6-phosphogluconate dehydrogenase GB:BAA22812 GI:2529229 [Glycine max] Length = 486 Score = 31.1 bits (67), Expect = 0.37 Identities = 11/43 (25%), Positives = 26/43 (60%) Frame = +3 Query: 72 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIK 200 +IG+ G ++G++ A+ A G+ ++VY+ ++ + +E K Sbjct: 7 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK 49 >At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family protein contains Pfam profiles: PF00393 6-phosphogluconate dehydrogenase C-terminal domain, PF03446 NAD binding domain of 6-phosphogluconate ;similar to 6-phosphogluconate dehydrogenase GB:BAA22812 GI:2529229 [Glycine max] Length = 486 Score = 31.1 bits (67), Expect = 0.37 Identities = 11/43 (25%), Positives = 26/43 (60%) Frame = +3 Query: 72 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIK 200 +IG+ G ++G++ A+ A G+ ++VY+ ++ + +E K Sbjct: 7 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK 49 >At3g04870.2 68416.m00529 zeta-carotene desaturase (ZDS1) / carotene 7,8-desaturase identical to SP|Q38893 Zeta-carotene desaturase, chloroplast precursor (EC 1.14.99.30) (Carotene 7,8-desaturase) {Arabidopsis thaliana} Length = 558 Score = 30.7 bits (66), Expect = 0.49 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 72 KIGIVGSGLIGRSWAMLFASVGYQVTVYD 158 K+ I+G+GL G S A+ G++V +YD Sbjct: 58 KVAIIGAGLAGMSTAVELLDQGHEVDIYD 86 >At3g04870.1 68416.m00528 zeta-carotene desaturase (ZDS1) / carotene 7,8-desaturase identical to SP|Q38893 Zeta-carotene desaturase, chloroplast precursor (EC 1.14.99.30) (Carotene 7,8-desaturase) {Arabidopsis thaliana} Length = 558 Score = 30.7 bits (66), Expect = 0.49 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 72 KIGIVGSGLIGRSWAMLFASVGYQVTVYD 158 K+ I+G+GL G S A+ G++V +YD Sbjct: 58 KVAIIGAGLAGMSTAVELLDQGHEVDIYD 86 >At1g56000.1 68414.m06425 amine oxidase-related contains Pfam profile PF01593: amine oxidase, flavin-containing Length = 384 Score = 29.1 bits (62), Expect = 1.5 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +3 Query: 48 MASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYD 158 M+S + K+ ++GSG+ G A A G VT++D Sbjct: 14 MSSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFD 50 >At1g55980.1 68414.m06421 expressed protein Length = 464 Score = 29.1 bits (62), Expect = 1.5 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +3 Query: 48 MASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYD 158 M+S + K+ ++GSG+ G A A G VT++D Sbjct: 152 MSSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFD 188 >At5g41670.2 68418.m05063 6-phosphogluconate dehydrogenase family protein contains Pfam profiles: PF00393 6-phosphogluconate dehydrogenase C-terminal domain, PF03446 NAD binding domain of 6-phosphogluconate Length = 487 Score = 28.7 bits (61), Expect = 2.0 Identities = 9/40 (22%), Positives = 25/40 (62%) Frame = +3 Query: 72 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIE 191 +IG+ G ++G++ A+ A G+ ++VY+ ++ + ++ Sbjct: 8 RIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLD 47 >At5g41670.1 68418.m05062 6-phosphogluconate dehydrogenase family protein contains Pfam profiles: PF00393 6-phosphogluconate dehydrogenase C-terminal domain, PF03446 NAD binding domain of 6-phosphogluconate Length = 487 Score = 28.7 bits (61), Expect = 2.0 Identities = 9/40 (22%), Positives = 25/40 (62%) Frame = +3 Query: 72 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIE 191 +IG+ G ++G++ A+ A G+ ++VY+ ++ + ++ Sbjct: 8 RIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLD 47 >At1g64190.1 68414.m07272 6-phosphogluconate dehydrogenase family protein contains Pfam profiles: PF00393 6-phosphogluconate dehydrogenase C-terminal domain, PF03446 NAD binding domain of 6-phosphogluconate Length = 487 Score = 28.7 bits (61), Expect = 2.0 Identities = 9/40 (22%), Positives = 25/40 (62%) Frame = +3 Query: 72 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIE 191 +IG+ G ++G++ A+ A G+ ++VY+ ++ + ++ Sbjct: 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLD 47 >At3g19450.1 68416.m02466 cinnamyl-alcohol dehydrogenase (CAD) identical to SP|P48523 Cinnamyl-alcohol dehydrogenase (EC 1.1.1.195) (CAD) [Arabidopsis thaliana] Length = 365 Score = 28.3 bits (60), Expect = 2.6 Identities = 18/61 (29%), Positives = 31/61 (50%) Frame = +3 Query: 45 IMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLEN 224 +MAS K GI+G G +G + ++G+ VTV K+ +AIE + + + + Sbjct: 178 LMASGLKG---GILGLGGVGHMGVKIAKAMGHHVTVISSSDKKKEEAIEHLGADDYVVSS 234 Query: 225 D 227 D Sbjct: 235 D 235 >At5g45150.1 68418.m05543 ribonuclease III family protein similar to CAF protein (RNA helicase/RNAseIII) [Arabidopsis thaliana] GI:6102610; contains Pfam profiles PF00035: Double-stranded RNA binding motif, PF00636 RNase3 domain Length = 957 Score = 27.9 bits (59), Expect = 3.4 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = +3 Query: 195 IKYQLHTLENDGLLRGELKASEQFQCIKGSTD-----LETAVKGAIFVQECVPENLDLKK 359 +K ++ +E ++G+ K +++ + S D LE++V + + ENLD KK Sbjct: 874 VKIEIPNIEGTFHIKGDAKPTKK-EAENSSADHMIRALESSVMSLVITNLQMHENLDGKK 932 Query: 360 KVFQNLDSVVDDNTI 404 K Q +S+ ++ T+ Sbjct: 933 KNLQMKESLNENKTL 947 >At1g71180.1 68414.m08213 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein similar to SP|P23523 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) (Tartronate semialdehyde reductase) {Escherichia coli}; contains Pfam profile PF03446: NAD binding domain of 6-phosphogluconate dehydrogenase Length = 318 Score = 27.9 bits (59), Expect = 3.4 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +3 Query: 72 KIGIVGSGLIGRSWAMLFASVGYQVTVY 155 +IG +G G++G + + GY VTVY Sbjct: 36 RIGWIGIGIMGSAMVSHIIAAGYSVTVY 63 >At1g71170.1 68414.m08212 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein contains Pfam profile: PF03446 NAD binding domain of 6-phosphogluconate Length = 299 Score = 27.9 bits (59), Expect = 3.4 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +3 Query: 72 KIGIVGSGLIGRSWAMLFASVGYQVTVY 155 +IG +G G++G + + GY VTVY Sbjct: 15 RIGWIGIGIMGSAMVSHILAAGYSVTVY 42 >At3g54660.1 68416.m06048 gluthatione reductase, chloroplast nearly identical to SP|P42770 Glutathione reductase, chloroplast precursor (EC 1.8.1.7) (GR) (GRASE) {Arabidopsis thaliana}; identical to cDNA glutathione reductase GI:451197 Length = 565 Score = 27.5 bits (58), Expect = 4.5 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = +3 Query: 63 KSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIK 200 K +KI IVG G I +A +F + +V V+ K + ED++ Sbjct: 259 KPKKIAIVGGGYIALEFAGIFNGLNCEVHVFIRQKKVLRGFDEDVR 304 >At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast, putative similar to SP|Q03460 Glutamate synthase [NADH], chloroplast precursor (EC 1.4.1.14) (NADH- GOGAT) {Medicago sativa} Length = 2208 Score = 27.1 bits (57), Expect = 6.0 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +3 Query: 57 KFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYD 158 K +K+ I+GSG G + A +G+ VTVY+ Sbjct: 1842 KRTGKKVAIIGSGPAGLAAADQLNKMGHLVTVYE 1875 >At4g14820.1 68417.m02279 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 722 Score = 27.1 bits (57), Expect = 6.0 Identities = 8/29 (27%), Positives = 16/29 (55%) Frame = -1 Query: 392 VNYAVEILEHLFFKVKILWNTFLNKYSSF 306 +NYA + + + + + WNT + +Y F Sbjct: 162 INYARNVFDEMSHRDVVTWNTMIERYCRF 190 >At3g17240.3 68416.m02203 dihydrolipoamide dehydrogenase 2, mitochondrial / lipoamide dehydrogenase 2 (MTLPD2) nearly identical to GB:AAF34796 [gi:6984216] from [Arabidopsis thaliana]; alternative splice form exists Length = 507 Score = 27.1 bits (57), Expect = 6.0 Identities = 15/59 (25%), Positives = 31/59 (52%) Frame = +3 Query: 30 VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 206 V+ST ++ +K+ ++G+G IG ++ +G +VTV + A + +I+ Q Sbjct: 202 VSSTGALSLTEIPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAADIVPAMDGEIRKQ 260 >At3g17240.1 68416.m02202 dihydrolipoamide dehydrogenase 2, mitochondrial / lipoamide dehydrogenase 2 (MTLPD2) nearly identical to GB:AAF34796 [gi:6984216] from [Arabidopsis thaliana]; alternative splice form exists Length = 507 Score = 27.1 bits (57), Expect = 6.0 Identities = 15/59 (25%), Positives = 31/59 (52%) Frame = +3 Query: 30 VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 206 V+ST ++ +K+ ++G+G IG ++ +G +VTV + A + +I+ Q Sbjct: 202 VSSTGALSLTEIPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAADIVPAMDGEIRKQ 260 >At1g79530.1 68414.m09271 glyceraldehyde 3-phosphate dehydrogenase, cytosolic, putative / NAD-dependent glyceraldehyde-3-phosphate dehydrogenase, putative similar to glyceraldehyde-3-phosphate dehydrogenase [Pinus sylvestris] GI:1100223; contains Pfam profiles PF02800: Glyceraldehyde 3-phosphate dehydrogenase C-terminal domain, PF00044: Glyceraldehyde 3-phosphate dehydrogenase NAD binding domain Length = 422 Score = 27.1 bits (57), Expect = 6.0 Identities = 25/76 (32%), Positives = 32/76 (42%) Frame = +3 Query: 30 VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQL 209 V S V +S K+GI G G IGR L + +VVA + D D KY Sbjct: 74 VPSAVRRSSSSGKTKVGINGFGRIGR----LVLRIATSRDDIEVVA--VNDPFIDAKYMA 127 Query: 210 HTLENDGLLRGELKAS 257 + L+ D G K S Sbjct: 128 YMLKYDS-THGNFKGS 142 >At1g64880.1 68414.m07355 ribosomal protein S5 family protein contains similarity to 30S ribosomal protein S5 GI:6969105 from [Campylobacter jejuni] Length = 515 Score = 27.1 bits (57), Expect = 6.0 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = +3 Query: 6 TRGLSCGTVASTVIMASKFKSEKIGIVGS 92 T G+ G V T+++ + FK+ K ++GS Sbjct: 450 TTGMKAGRVVKTILLLAGFKNIKSKVIGS 478 >At1g48030.2 68414.m05351 dihydrolipoamide dehydrogenase 1, mitochondrial / lipoamide dehydrogenase 1 (MTLPD1) identical to GB:AAF34795 [gi:12704696] from [Arabidopsis thaliana] Length = 507 Score = 27.1 bits (57), Expect = 6.0 Identities = 14/59 (23%), Positives = 30/59 (50%) Frame = +3 Query: 30 VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 206 V+ST ++ +K+ ++G+G IG ++ +G +VTV + + +I+ Q Sbjct: 202 VSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAGDIVPSMDGEIRKQ 260 >At1g48030.1 68414.m05350 dihydrolipoamide dehydrogenase 1, mitochondrial / lipoamide dehydrogenase 1 (MTLPD1) identical to GB:AAF34795 [gi:12704696] from [Arabidopsis thaliana] Length = 507 Score = 27.1 bits (57), Expect = 6.0 Identities = 14/59 (23%), Positives = 30/59 (50%) Frame = +3 Query: 30 VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 206 V+ST ++ +K+ ++G+G IG ++ +G +VTV + + +I+ Q Sbjct: 202 VSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAGDIVPSMDGEIRKQ 260 >At5g08070.1 68418.m00941 TCP family transcription factor, putative similar to TFPD (GI:6681577) [Arabidopsis thaliana] ; putative basic helix-loop-helix DNA binding protein TCP2 - Arabidopsis thaliana, EMBL:AF072691 Length = 242 Score = 26.6 bits (56), Expect = 7.9 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 2/90 (2%) Frame = +3 Query: 129 SVGYQVTVYDVVAKQ-ITDAIEDIKYQLHTLENDGLLRGELKASEQFQCIKGS-TDLETA 302 SV + VYD+ + ++ + I + L +ND L L+ F + + T L + Sbjct: 54 SVMTAIQVYDLQERLGLSQPSKVIDWLLEVAKNDVDLLPPLQFPPGFHQLNPNLTGLGES 113 Query: 303 VKGAIFVQECVPENLDLKKKVFQNLDSVVD 392 G + E LDL+K+ + NLD V D Sbjct: 114 FPGVFDLGRTQREALDLEKRKWVNLDHVFD 143 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,060,064 Number of Sequences: 28952 Number of extensions: 207902 Number of successful extensions: 639 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 627 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 638 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 752336160 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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