Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n08r
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1082 - 8847795-8848033,8848511-8848724                           32   0.53 
12_01_0651 - 5507935-5509638                                           29   2.8  
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45...    29   2.8  
12_01_0060 - 499291-501228                                             29   3.7  
01_01_0758 + 5843702-5843874,5844021-5844083,5844174-5844290,584...    29   3.7  
04_03_0074 - 10705413-10705523,10705602-10706330                       29   4.9  
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549...    28   6.5  
07_03_1069 + 23743031-23744062                                         28   8.6  

>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 205 WFLQPTKYENDVLFFIYNREYNDALKLG 122
           W    T Y  DVL F YN+EY+D   +G
Sbjct: 59  WLAGKTFYAGDVLVFKYNKEYHDVAVVG 86


>12_01_0651 - 5507935-5509638
          Length = 567

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -2

Query: 256 QDRVIFGTNTADTTREQWFLQPTKYENDVLFFIYNREYNDALKLGSI 116
           QD  I   N    TRE+W  + T  E ++L    NR Y D  K+ SI
Sbjct: 154 QDATIRKMNNGYWTREEWPPKDTWPELEMLAMESNRSYLDPWKVSSI 200


>11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-452293
          Length = 1430

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 41   PGEDVRETSYFTIVSKCHTVSRSVHNTTELQSIV 142
            PGE +R T    + S CHT  + V   T  + IV
Sbjct: 1377 PGETIRVTKNLRVCSDCHTAIKLVSRITHREIIV 1410


>12_01_0060 - 499291-501228
          Length = 645

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 41  PGEDVRETSYFTIVSKCHTVSRSVHNTTELQSIV 142
           PGE +R T    + S CHT  + +   T  + IV
Sbjct: 592 PGETIRVTKNLRVCSDCHTAIKLISRITHREIIV 625


>01_01_0758 +
           5843702-5843874,5844021-5844083,5844174-5844290,
           5847180-5847945
          Length = 372

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = -2

Query: 451 LALKLGPTLDPANERLAYGDGKEKNSDLISWKFITLWENNRVYFKIHNTKYNQYLKLSS 275
           +AL  GP L P N   A+G G E  S   + +    W    +   + N  ++ ++ L S
Sbjct: 146 IALYSGPALSPLNHHRAFGGGAESGSSGAATR--ARWVTGTLLMLLSNVTWSLWIVLMS 202


>04_03_0074 - 10705413-10705523,10705602-10706330
          Length = 279

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
 Frame = -1

Query: 422 SRERETCIRRW*GKEQRPHQLEVHYLVGEQQSVLQDPQH*VQPVLETKFDD*LQHSRP-C 246
           SR R    R    K Q PHQL      G+++   Q+ +   +      F D + HSR   
Sbjct: 157 SRARSEAYRLLQTKNQHPHQLGTAGYAGKEEEWQQEDEEAEESNTPLVFGD-IPHSRARN 215

Query: 245 YIRHQHRRHHQGAV-VPPAHEVRKRRPVLHLQSRVQRCFEA 126
           + R +++++  G + +P   + R  R +  L +  Q   EA
Sbjct: 216 WARARYQKNVDGTIFMPYPEDQRVYRAINELVAEQQASQEA 256


>01_06_0795 -
           32051794-32053362,32053452-32053595,32054102-32054965,
           32055335-32055892
          Length = 1044

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 241 FGTNTADTTREQWFLQPTKYENDVLFFIYNRE 146
           FG +T+    E   LQP K EN +LF +  R+
Sbjct: 753 FGCSTSIMVSEGDLLQPEKIENGILFNVVKRD 784


>07_03_1069 + 23743031-23744062
          Length = 343

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -1

Query: 257 SRPCYIRHQHRRHHQGAVVPPAHEVRKRRPVLHLQSRVQRC 135
           SRPC  R + R      V PPA   RKR P   +     RC
Sbjct: 58  SRPCRARKRGRPSVVPPVSPPAGAKRKRAPAYPVPVAPLRC 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,749,758
Number of Sequences: 37544
Number of extensions: 384445
Number of successful extensions: 1209
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)