Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n08r
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.41 
SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)                      29   2.9  
SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)              29   2.9  
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_11880| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.92)           29   3.8  
SB_1794| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_27141| Best HMM Match : zf-CW (HMM E-Value=3.1)                     28   8.8  
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_14042| Best HMM Match : WD40 (HMM E-Value=2.1)                      28   8.8  

>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +1

Query: 529 QCAVRCRPTACSSTPWCSDSCQ*SGC*LHSG*WSPCLGSRIPSSDGQRCRSHR*GCCCTV 708
           +C   C+   CS++  C  SC   GC L+    +     +   +    C+S   G  CT 
Sbjct: 219 KCGKDCQQVVCSASGKCDQSCDGEGCNLYCSEGAKTCNQKCQGACVTDCKSRWCGVTCTG 278

Query: 709 S 711
           S
Sbjct: 279 S 279


>SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
 Frame = -3

Query: 702 TTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXX---XXXRVGTPWSTATSCGSATDST 532
           T  +SPV TT+L+     T + A AP                  TP  T  +  S  D+T
Sbjct: 150 TLTASPVVTTSLASAPVVTTSLASAPVETTSLASTPVETTSLASTPVDTTLTASSPVDTT 209

Query: 531 LSESTSPITLDSSWP 487
           L+ S+   T  ++ P
Sbjct: 210 LTASSPVETTPTASP 224


>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
 Frame = +2

Query: 509 IGEVLSDNVLSVAD---PQLVAVLH-GVPTLVNDQVVNYILDDGALALVLVFQALT--DS 670
           + EV+   VL+      P   A +H G+P  V    VN +   G  A+ L +QA+   DS
Sbjct: 54  VSEVILGQVLTAGQGQGPARQAAIHAGIPACVPAYGVNMLCGSGLKAVALGYQAVAMGDS 113

Query: 671 AVVVTG 688
            +VV G
Sbjct: 114 NIVVAG 119


>SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)
          Length = 249

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 451 LALKLGPTLDPANERLAYGD 392
           +++KL P +DP   RLAYGD
Sbjct: 6   ISVKLPPDIDPTKARLAYGD 25


>SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)
          Length = 1027

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = -3

Query: 702 TTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXRVGTPWSTATSCGSATDSTLSE 523
           TTA++ VTT   +     T T A A              V T  +T T+  +A  +  + 
Sbjct: 571 TTAAATVTTVTTAAATVTTVTTAAATVTTVTTAAATVTTVATAAATVTTVTTAAATLTTV 630

Query: 522 STSPITL 502
           +T+  TL
Sbjct: 631 TTAAATL 637



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = -3

Query: 702 TTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXRVGTPWSTATSCGSATDSTLSE 523
           TTA++ VTT A +     T T A A              V T  +T T+  +A  +TL+ 
Sbjct: 601 TTAAATVTTVATAAATVTTVTTAAATLTTVTTAAATLTTVTTAAATLTTVTTAA-ATLTT 659

Query: 522 STSPIT 505
           + + +T
Sbjct: 660 AAATVT 665



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = -3

Query: 702 TTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXRVGTPWSTATSCGSATDSTLSE 523
           TTA++ VTT   +     T T A A              V T  +T T+  +A  +  + 
Sbjct: 581 TTAAATVTTVTTAAATVTTVTTAAATVTTVATAAATVTTVTTAAATLTTVTTAAATLTTV 640

Query: 522 STSPITL 502
           +T+  TL
Sbjct: 641 TTAAATL 647


>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/67 (29%), Positives = 26/67 (38%)
 Frame = -2

Query: 340 ENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVIFGTNTADTTREQWFLQPTKYENDVLFF 161
           E N  Y   +NT+YN        T+ NT+    + T   +   E      T Y  D    
Sbjct: 365 EYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYTEYITEYITEYNTDYNTD---- 420

Query: 160 IYNREYN 140
            YN EYN
Sbjct: 421 -YNTEYN 426


>SB_11880| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.92)
          Length = 425

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = -3

Query: 702 TTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXRVGTPWSTATS---CGSATDST 532
           TT ++  TTTA +     T T A A                T  +TAT      +AT+ T
Sbjct: 128 TTTAAEATTTAAATEVTTTTTAAEATTTATEVTTTTTATEVTMTTTATELTMTTTATEVT 187

Query: 531 LSESTSPITLDSS 493
           ++ +   +T+ ++
Sbjct: 188 MTTTAKEVTMTTT 200


>SB_1794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = -2

Query: 340 ENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVIFGTNTADTTREQWFLQPTKYENDVLFF 161
           E N  Y   +NT+YN        T+ NT+    + T        ++  + T+Y  +    
Sbjct: 84  EYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYTEYNTE---- 139

Query: 160 IYNREYN 140
            YN EYN
Sbjct: 140 -YNTEYN 145


>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 558 SCGSATDSTLSESTSPITLDSSWP 487
           S GS TDS  S STSP+ L  + P
Sbjct: 619 SAGSGTDSASSRSTSPLNLPYTSP 642


>SB_27141| Best HMM Match : zf-CW (HMM E-Value=3.1)
          Length = 397

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 11  ASDCLERCNEPGEDVRETSYFTIVSKCHTVSRSV 112
           AS+ L RCN P +DV +    +   +C T+  +V
Sbjct: 71  ASEKLSRCNMPYDDVSDPEDISSAFQCFTLEENV 104


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = +2

Query: 62   TSYFTIVSKCHTVSRSVHNTTELQSIVVLAIVDEEQDVVFVLRXXXXXXXXXXXXXXXAE 241
            TS     +K HTV+RSV N+T        A++   +DV                    AE
Sbjct: 871  TSILATANKLHTVNRSVWNSTSQVMTSSAAVLSTLKDVARPTSVSSSSPSVTLNMTNVAE 930

Query: 242  YNT 250
             NT
Sbjct: 931  KNT 933


>SB_14042| Best HMM Match : WD40 (HMM E-Value=2.1)
          Length = 236

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 558 SCGSATDSTLSESTSPITLDSSWP 487
           S GS TDS  S STSP+ L  + P
Sbjct: 64  SAGSGTDSASSRSTSPLNLPYTSP 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,560,274
Number of Sequences: 59808
Number of extensions: 449729
Number of successful extensions: 1452
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)