Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10n08r
(719 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59210.2 68418.m07421 myosin heavy chain-related contains wea... 32 0.44
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea... 32 0.44
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A... 29 4.1
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A... 29 4.1
At3g23330.1 68416.m02943 pentatricopeptide (PPR) repeat-containi... 28 7.2
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain... 28 7.2
At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containi... 27 9.5
At2g41660.1 68415.m05147 expressed protein contains Pfam profile... 27 9.5
At1g24090.1 68414.m03039 RNase H domain-containing protein very ... 27 9.5
>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, gizzard smooth muscle
(Swiss-Prot:P10587) [Gallus gallus]
Length = 433
Score = 31.9 bits (69), Expect = 0.44
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = -2
Query: 712 EKLY--NSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSR 581
EKL+ NS L+ Y ++ S ++ENQ K + QNV ++DK R
Sbjct: 298 EKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 343
>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, gizzard smooth muscle
(Swiss-Prot:P10587) [Gallus gallus]
Length = 434
Score = 31.9 bits (69), Expect = 0.44
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = -2
Query: 712 EKLY--NSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSR 581
EKL+ NS L+ Y ++ S ++ENQ K + QNV ++DK R
Sbjct: 299 EKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 344
>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
thaliana]; similar to cytochrome P450 71A4, Solanum
melongena, PIR2:S36805
Length = 390
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 709 KLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLII 593
K+ + IL+G D A EY Q K IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141
>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
thaliana]; similar to cytochrome P450 71A4, Solanum
melongena, PIR2:S36805
Length = 497
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 709 KLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLII 593
K+ + IL+G D A EY Q K IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141
>At3g23330.1 68416.m02943 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 679
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 38 EPGEDVRETSYFTIVSKCHTVSRSVHNTTELQSIV 142
EPG +R T I + CH + + TE + IV
Sbjct: 625 EPGTTIRVTKNIRICTDCHVAIKFISKITEREIIV 659
>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
Pfam profile PF04434: SWIM zinc finger
Length = 750
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 601 LIIDKSRNTMEYCYKLWVGNGQHIVRKYFPYNF 503
+++D EY KL + +G KYFP F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418
>At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 792
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 38 EPGEDVRETSYFTIVSKCHTVSRSVHNTTELQSIV 142
EPG ++R + CHTV++ + TE +V
Sbjct: 738 EPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVV 772
>At2g41660.1 68415.m05147 expressed protein contains Pfam profile
PF04759: Protein of unknown function, DUF617
Length = 297
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 63 PATSPSCPNAIRSPEASTILPS 128
P TSP+ + +RSP +S ++PS
Sbjct: 22 PVTSPARSSHVRSPSSSALIPS 43
>At1g24090.1 68414.m03039 RNase H domain-containing protein very low
similarity to GAG-POL precursor [Oryza sativa (japonica
cultivar-group)] GI:5902445; contains Pfam profiles
PF00075: RNase H, PF04134: Protein of unknown function,
DUF393
Length = 535
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 53 VRETSYFTIVSKCHTVSRSVHNTTELQSIVVLAIVDEEQDVVFVLR 190
V +S F I S SRS +++ S V++ VD+E+D FV+R
Sbjct: 43 VAVSSVFGICSVHSYSSRSKAVKSKMLSSTVVSAVDKEKDAFFVVR 88
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,823,500
Number of Sequences: 28952
Number of extensions: 299388
Number of successful extensions: 896
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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