Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n08f
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    33   0.11 
U55364-5|AAQ23124.1|  368|Caenorhabditis elegans Prion-like-(q/n...    29   1.9  
AF078157-2|AAN84818.1|  176|Caenorhabditis elegans Hypothetical ...    29   1.9  
AF078157-1|AAG24071.1|  235|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical p...    29   3.3  
U64601-10|AAP40523.1|   91|Caenorhabditis elegans Hypothetical p...    28   4.3  
U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-lik...    28   4.3  
Z46343-4|CAA86460.1|  336|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical ...    27   7.5  
Z78539-8|CAE17715.1|  223|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z69661-7|CAE17832.1|  223|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    27   10.0 
AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical ...    27   10.0 

>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 21/72 (29%), Positives = 30/72 (41%)
 Frame = +1

Query: 148 NCTTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXXVGTPWSTATSCGSATDSTL 327
           NC   +    TT  S  +  T T A +                T  ST  S  ++TDST 
Sbjct: 171 NCNVLTDIPVTTTTSTTSSTTTTTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTT 230

Query: 328 SESTSPITLDSS 363
           +EST+  T +S+
Sbjct: 231 TESTTESTTEST 242



 Score = 31.9 bits (69), Expect = 0.35
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = +1

Query: 139 SRRNCTTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXXVGTPWSTATSCGSATD 318
           S    TTA+S   +T+ S  +  T +   +                T  ST  S  ++TD
Sbjct: 188 SSTTTTTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTTESTTESTSTSTD 247

Query: 319 STLSESTSPIT 351
           ST +ESTS  T
Sbjct: 248 STTTESTSTST 258



 Score = 27.5 bits (58), Expect = 7.5
 Identities = 20/81 (24%), Positives = 35/81 (43%)
 Frame = +1

Query: 121 AVLTKNSRRNCTTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXXVGTPWSTATS 300
           A  T  S    T +++  +TT  +  + +T T +                  T  +T  S
Sbjct: 195 ATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTTESTTESTS-TSTDSTTTES 253

Query: 301 CGSATDSTLSESTSPITLDSS 363
             ++TDST +EST+  T +S+
Sbjct: 254 TSTSTDSTTTESTTESTTEST 274


>U55364-5|AAQ23124.1|  368|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
           isoform b protein.
          Length = 368

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
 Frame = +3

Query: 42  MKFLVVFASCVLAVSA-GVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEY-EN 215
           M+FL + + CVLAV+A   +  S       ++  +   Y S      + A  Q ++Y +N
Sbjct: 1   MQFLTILSVCVLAVAAQQQSAYSTNQQYQPSQGAQYDQYGSSTLQYNNGATAQPIQYNQN 60

Query: 216 QGKGSIIQNVVNNLIIDKSRNTMEYCYKLWVGNGQH 323
           Q  GS  Q   N +     +N+ +Y     + N Q+
Sbjct: 61  QQYGSTAQYNQNQM--QNQQNSNQYSTTSNMNNQQN 94


>AF078157-2|AAN84818.1|  176|Caenorhabditis elegans Hypothetical
           protein F25E5.8b protein.
          Length = 176

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -3

Query: 122 AHASRGHF---SDAGADGEHARREHHEKFHY-HSCLF 24
           A  S G+F   S+ G  G H   EHH K H+ HS  F
Sbjct: 25  ASRSTGNFEEGSEEGTSGSHKPEEHHHKEHHGHSLYF 61


>AF078157-1|AAG24071.1|  235|Caenorhabditis elegans Hypothetical
           protein F25E5.8a protein.
          Length = 235

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -3

Query: 122 AHASRGHF---SDAGADGEHARREHHEKFHY-HSCLF 24
           A  S G+F   S+ G  G H   EHH K H+ HS  F
Sbjct: 25  ASRSTGNFEEGSEEGTSGSHKPEEHHHKEHHGHSLYF 61


>Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical
           protein C30H6.4 protein.
          Length = 476

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = +1

Query: 130 TKNSRRNCTTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXXVGTPWSTATSCGS 309
           T +S  + +T +S VTTT ++     T T    P               TP +T+T+  +
Sbjct: 276 TTSSTTSTSTTTSVVTTTTVTSTTEPT-TSTSTPTTTTTMQTTTPSTTSTPTTTSTTTTT 334

Query: 310 ATDSTLSESTSPIT 351
           +  +T   +T P T
Sbjct: 335 SASTTTISTTKPPT 348


>U64601-10|AAP40523.1|   91|Caenorhabditis elegans Hypothetical
           protein M03F4.7b protein.
          Length = 91

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 125 TAHASRGHFSDAGADGEHARREHHEKFHYH 36
           TA AS  H SD   DGEH + + H+K + H
Sbjct: 13  TALASH-HSSDPSKDGEHFKGKEHDKKYDH 41


>U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical
           protein M03F4.7a protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 125 TAHASRGHFSDAGADGEHARREHHEKFHYH 36
           TA AS  H SD   DGEH + + H+K + H
Sbjct: 13  TALASH-HSSDPSKDGEHFKGKEHDKKYDH 41


>AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-like
           protein protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 125 TAHASRGHFSDAGADGEHARREHHEKFHYH 36
           TA AS  H SD   DGEH + + H+K + H
Sbjct: 13  TALASH-HSSDPSKDGEHFKGKEHDKKYDH 41


>Z46343-4|CAA86460.1|  336|Caenorhabditis elegans Hypothetical
           protein T23F11.5 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -1

Query: 580 ELSFKYWLYLVLWILKYTLLFSHKVMNFQLMRSLFFSLPSPYASLSF 440
           + S+   L L+ +I++ TLL  + ++NF ++R   FS  + +   SF
Sbjct: 22  DTSYDSGLELLKYIIQVTLLSINFILNFLIIRVTMFSKNNDFRENSF 68


>AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical
           protein Y5H2A.4 protein.
          Length = 558

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 327 QCAVRCRPTACSSTPWCSDSC 265
           QC + C+PT   + P C   C
Sbjct: 225 QCTLECQPTCQQAVPQCQQQC 245


>Z78539-8|CAE17715.1|  223|Caenorhabditis elegans Hypothetical
           protein F48F7.8 protein.
          Length = 223

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 571 FKYWLYLVLWILKYT-LLFSHKVMNFQL-MRSLFFSLPSPYASLS 443
           F  WL+ + + L    +L S     F L +R +F+SL SPY  LS
Sbjct: 132 FTLWLHRIFYSLASPYILLSGFTEYFTLWLRRIFYSLASPYILLS 176


>Z69661-7|CAE17832.1|  223|Caenorhabditis elegans Hypothetical
           protein F48F7.8 protein.
          Length = 223

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 571 FKYWLYLVLWILKYT-LLFSHKVMNFQL-MRSLFFSLPSPYASLS 443
           F  WL+ + + L    +L S     F L +R +F+SL SPY  LS
Sbjct: 132 FTLWLHRIFYSLASPYILLSGFTEYFTLWLRRIFYSLASPYILLS 176


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 136 NSRRNCTTASSPVTTTALSVRAWNT-RTKARAPXXXXXXXXXXXXXVGTPWSTATSCGSA 312
           +S  + TT ++P +T + S    +T  T   AP               TP STA+S  S+
Sbjct: 464 SSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSS---STPSSTASSSVSS 520

Query: 313 TDSTLSESTS 342
           T S+   STS
Sbjct: 521 TASSTQSSTS 530


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 136 NSRRNCTTASSPVTTTALSVRAWNT-RTKARAPXXXXXXXXXXXXXVGTPWSTATSCGSA 312
           +S  + TT ++P +T + S    +T  T   AP               TP STA+S  S+
Sbjct: 464 SSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSS---STPSSTASSSVSS 520

Query: 313 TDSTLSESTS 342
           T S+   STS
Sbjct: 521 TASSTQSSTS 530


>AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical
           protein Y22F5A.2 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
 Frame = -3

Query: 356 SKVIGEVLSDNVLSVADPQLVAVLHGVPTLVNDQ--------VVNYILDDGALALVLVFQ 201
           S + G V+      +   QL  +L  + T ++++        V++ I+ +   A   +F 
Sbjct: 203 SIIFGTVILSTSYYILYAQLYIMLKSIKTRISNRSFKKHSVAVISTIMQNLVFAFFFLFP 262

Query: 200 ALTDSAVVVTGEDAVVQFLLEFFVRTAHAS 111
            L  S V++TG+DA    L+   V + H+S
Sbjct: 263 ILILSVVILTGKDASGACLVLIGVISFHSS 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,264,929
Number of Sequences: 27780
Number of extensions: 249900
Number of successful extensions: 861
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)