Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n07r
         (787 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001890-1|AAN71679.1|  566|Drosophila melanogaster SD16013p pro...    29   7.2  
AY752878-1|AAV33343.1|  593|Drosophila melanogaster TAF6-like pr...    29   7.2  
AE014297-268|AAF52013.3|  589|Drosophila melanogaster CG10390-PA...    29   7.2  

>BT001890-1|AAN71679.1|  566|Drosophila melanogaster SD16013p
           protein.
          Length = 566

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 437 IKIQTKNSCDLKKSHKRKSVFNEGKEF*AELTLGKIAKNMVIP 565
           +KI T N C+    H++K +F++  +F     +    KN +IP
Sbjct: 509 VKISTPNLCNTMLQHQKKDLFSKPSDFVVPQLVVNQFKNGLIP 551


>AY752878-1|AAV33343.1|  593|Drosophila melanogaster TAF6-like
           protein protein.
          Length = 593

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 437 IKIQTKNSCDLKKSHKRKSVFNEGKEF*AELTLGKIAKNMVIP 565
           +KI T N C+    H++K +F++  +F     +    KN +IP
Sbjct: 509 VKISTPNLCNTMLQHQKKDLFSKPSDFVVPQLVVNQFKNGLIP 551


>AE014297-268|AAF52013.3|  589|Drosophila melanogaster CG10390-PA
           protein.
          Length = 589

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 437 IKIQTKNSCDLKKSHKRKSVFNEGKEF*AELTLGKIAKNMVIP 565
           +KI T N C+    H++K +F++  +F     +    KN +IP
Sbjct: 505 VKISTPNLCNTMLQHQKKDLFSKPSDFVVPQLVVNQFKNGLIP 547


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,382,003
Number of Sequences: 53049
Number of extensions: 550573
Number of successful extensions: 1034
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3634208604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)