Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10n07f
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 28 0.98
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 28 1.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 1.7
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 26 4.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.0
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 25 6.9
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 6.9
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 25 9.1
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 25 9.1
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 28.3 bits (60), Expect = 0.98
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Frame = +3
Query: 378 YHAMDQFKSWRLTIITTPSLTTANTMTRKSLIKCSSGSSL--ETRSLKATLKLLSIISSR 551
Y D F +W + +RK + + ++L E +SLK T K LS ISS
Sbjct: 120 YDTKDGFVAWNTLDDDFRPIVPDQERSRKINPQKGNNNNLLKENKSLKTTAKDLSDISSS 179
Query: 552 NTPKR*TLRNLCIPIFQRK---PANLPAP 629
+ K N P+F K AN+P P
Sbjct: 180 SMKK---ANNSSKPLFSGKLTFKANIPVP 205
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 27.9 bits (59), Expect = 1.3
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
Frame = +2
Query: 233 EYKLEGDVVKVKNVHIIDGVKKYIE---GTAKL-TDDANKAAKLTVTFKFGEISRDGSVQ 400
EY++EG +++ N IID + E G KL KA + T+T E D Q
Sbjct: 600 EYRMEGQFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKAGRTTITNITSE-PLDTPEQ 658
Query: 401 V---LATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIK-EHSKEI 568
V L N ++A + +SH VF+ L+ + G+ + N I S+ +
Sbjct: 659 VTWLLDQASKNRSVAATNANEHSSRSHSVFMLHLNGSNSTTGETCRSTLNLIDLAGSERL 718
Query: 569 DSSKLV 586
SS+ V
Sbjct: 719 SSSQSV 724
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 506 KLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEE 607
K+EGDAKT DN +++ K D K D++EE
Sbjct: 1306 KIEGDAKTGDDNEMEDLDKMEDLEK---PDYAEE 1336
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 318 SSPTTPIKPQS*QSLLSLEKYHAMDQFKSWRLTIITTPSLTTANTMTRKSL 470
SS P P ++ ++ S+RL + T+P+L N RKSL
Sbjct: 147 SSTMIPTTPSKNPEPVAQHTPTVLETPSSYRLQVYTSPNLLRVNAPCRKSL 197
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 429 PSLTTANTMTRKSLIKCSSGSSLETRSLKATLKLLSIISSRNTPKR*TL 575
P+LTT+NT + S SS +E+ S+ + + I++ +TP T+
Sbjct: 296 PNLTTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTI 344
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -1
Query: 476 LDETFSCHRICSCKRWRSYYSQSP 405
L E H+ C+ K W YS+ P
Sbjct: 439 LVEVILAHKNCTLKEWNQLYSEIP 462
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 6.9
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 143 NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKY 301
N N +GI E+SK+ + KN + SS + K V+ + I+G+K +
Sbjct: 376 NINEINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRAR----IEGIKAH 424
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 9.1
Identities = 21/74 (28%), Positives = 29/74 (39%)
Frame = +2
Query: 380 SRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHS 559
+RDG VLA + N I Y ++ H V +L +A +V NF
Sbjct: 41 NRDGKTDVLANEEGNRQIPSILSYHGDQEYHGV-----QARGQLVRNADNSVTNFRDLLG 95
Query: 560 KEIDSSKLVHTDFS 601
K D L H +S
Sbjct: 96 KSHDELTLHHCHYS 109
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +3
Query: 279 SSTASRSI*KGRPSSPTTPI--KPQS*QSLLSLEKY 380
+S SR I PSSP+TPI P+ + +LSL++Y
Sbjct: 534 ASLPSRRIVYKPPSSPSTPISMNPRP-KGILSLQQY 568
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,467
Number of Sequences: 5004
Number of extensions: 46243
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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