Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n05r
         (731 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1 prot...    50   7e-08
AF164153-1|AAD47077.1|  131|Anopheles gambiae ribosomal protein ...    24   5.6  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.7  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.7  

>AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1
           protein.
          Length = 107

 Score = 50.0 bits (114), Expect = 7e-08
 Identities = 19/35 (54%), Positives = 29/35 (82%)
 Frame = -3

Query: 687 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 583
           ECE++A++YNI SMPTF+F+K  + + +FSGAN +
Sbjct: 62  ECEELAAQYNIASMPTFLFIKRKEVVGQFSGANAE 96


>AF164153-1|AAD47077.1|  131|Anopheles gambiae ribosomal protein S17
           protein.
          Length = 131

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +2

Query: 113 T*KKKNIVILVTYKSF*KHDGNLSYTLISIGEIIHLSKPDKNKNKNITIHTLKFLSNHLV 292
           T KK + VI+  Y +    D + +  ++    II  +KP +NK      H +K L +  V
Sbjct: 8   TIKKASKVIIEKYYTRLTMDFDTNKRIVEEVAIIP-TKPLRNKIAGFVTHLMKRLRHSQV 66

Query: 293 KKTKIEIQ 316
           +   I++Q
Sbjct: 67  RGISIKLQ 74


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 539 LVSIYLCLRIVVLSLSTLAPE 601
           LVSI +C+ +VVL++   +P+
Sbjct: 316 LVSISICVTVVVLNVHFRSPQ 336


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 539 LVSIYLCLRIVVLSLSTLAPE 601
           LVSI +C+ +VVL++   +P+
Sbjct: 316 LVSISICVTVVVLNVHFRSPQ 336


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,777
Number of Sequences: 2352
Number of extensions: 13079
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74844540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)