Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n05f
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    69   4e-13
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    56   2e-09
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    55   4e-09
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    50   2e-07
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    46   2e-06
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    41   7e-05
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    31   0.10 
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    28   0.55 
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   2.9  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   6.7  
SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar...    25   6.7  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   6.7  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    24   8.9  

>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 68.5 bits (160), Expect = 4e-13
 Identities = 33/90 (36%), Positives = 50/90 (55%)
 Frame = +2

Query: 71  IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGP*LDEIAAEMXXXXXXXXXXXXXXX 250
           + DS + K+ + +  DKLVV+DF ATWCGPCK I P  ++  +                 
Sbjct: 5   VSDSSEFKSIVCQ--DKLVVVDFFATWCGPCKAIAPKFEQF-SNTYSDATFIKVDVDQLS 61

Query: 251 XXASEYNINSMPTFVFVKNGKKLDEFSGAN 340
             A+E  +++MP+F   KNG+K++E  GAN
Sbjct: 62  EIAAEAGVHAMPSFFLYKNGEKIEEIVGAN 91


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 56.4 bits (130), Expect = 2e-09
 Identities = 28/91 (30%), Positives = 47/91 (51%)
 Frame = +2

Query: 71  IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGP*LDEIAAEMXXXXXXXXXXXXXXX 250
           ++   D  TR++   DK+ V+DF A WCGPCK + P L+++ +E                
Sbjct: 22  VESFGDYNTRIS--ADKVTVVDFYADWCGPCKYLKPFLEKL-SEQNQKASFIAVNADKFS 78

Query: 251 XXASEYNINSMPTFVFVKNGKKLDEFSGANV 343
             A +  + ++PT V  + G++LD   GA+V
Sbjct: 79  DIAQKNGVYALPTMVLFRKGQELDRIVGADV 109


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 55.2 bits (127), Expect = 4e-09
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +2

Query: 125 VVIDFMATWCGPCKMIGP*LDEIAAEMXXXXXXXXXXXXXXXXX-ASEYNINSMPTFVFV 301
           + +D  A WCGPCK I P   ++A++                   AS   + +MPTFVF 
Sbjct: 22  LAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFF 81

Query: 302 KNGKKLDEFSGAN 340
           +NGK++D  +GAN
Sbjct: 82  ENGKQIDMLTGAN 94


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +2

Query: 116 DKLVVIDFMATWCGPCKMIGP*LDEIAAEM-XXXXXXXXXXXXXXXXXASEYNINSMPTF 292
           DK++++ F A WCG CK + P  +  A E+                   SEY+I   PT 
Sbjct: 39  DKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTL 98

Query: 293 VFVKNGKKLDEFSG 334
              KNGK++ ++SG
Sbjct: 99  NVFKNGKQISQYSG 112



 Score = 35.5 bits (78), Expect = 0.004
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +2

Query: 119 KLVVIDFMATWCGPCKMIGP*LDEIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVF 298
           K V+++F A WCG CK + P  +++A E                   S  +I+  PT +F
Sbjct: 374 KDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDIS-VSISGFPTIMF 432

Query: 299 VKNGKKLD 322
            K   K++
Sbjct: 433 FKANDKVN 440


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 46.4 bits (105), Expect = 2e-06
 Identities = 23/94 (24%), Positives = 42/94 (44%)
 Frame = +2

Query: 59  MSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGP*LDEIAAEMXXXXXXXXXXX 238
           MS+ I   +  +  L    +++++++F A W  PCK +    D+ A +            
Sbjct: 1   MSVEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKD-TKNAVFLKIEA 59

Query: 239 XXXXXXASEYNINSMPTFVFVKNGKKLDEFSGAN 340
                 A  +++N++P FV +   K L   SGAN
Sbjct: 60  EKFSDIAESFDVNAVPLFVLIHGAKVLARISGAN 93


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 41.1 bits (92), Expect = 7e-05
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
 Frame = +2

Query: 65  IHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGP*LDEIAA--EMXXXXXXXXXXX 238
           + ++  ++L+  +  A  K  +I+F ATWCG CK + P  +E+ A  E            
Sbjct: 23  VELQSLNELENTI-RASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDA 81

Query: 239 XXXXXXASEYNINSMPTFV-FVKNGKKLDEFSGA 337
                 A +Y+I   PT + F  +G +  ++S A
Sbjct: 82  DTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNA 115



 Score = 29.9 bits (64), Expect = 0.18
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 119 KLVVIDFMATWCGPCKMIGP 178
           K V+++F A WCG CK + P
Sbjct: 159 KDVLVEFYADWCGYCKRLAP 178


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 30.7 bits (66), Expect = 0.10
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
 Frame = +2

Query: 77  DSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGP*LDEIAAEMXXXXXXXXXXXXXXXXX 256
           +S + +  +   G  LVV  F A WCG CK + P   ++A+ +                 
Sbjct: 37  NSKNFRKFVKAKGPSLVV--FYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNR 94

Query: 257 A--SEYNINSMPTFVFVKNGKKLDEFSGAN 340
           A  S+Y +   PT   V    K    S  +
Sbjct: 95  AVCSQYQVQGFPTIKLVYPSSKGSSLSSTD 124


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +2

Query: 152 CGPCKMIGP*LD---EIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVFVKNGKKLD 322
           CG CK +GP  D   E A E                  +S  NI ++PT    +NG+ ++
Sbjct: 54  CGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLYLYQNGEIVE 113

Query: 323 E 325
           E
Sbjct: 114 E 114


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = -3

Query: 370 FKDSCFEFVDVSAREFVQFLAILNEDERRHRVNVVLAGDVLALINVHLHNDDGI*HFGG- 194
           F  + +E+VD ++ + + F+  L  +      ++   GD +  INV L + D   +FGG 
Sbjct: 114 FSANLYEYVDGNS-DGISFVLNLENNNDTSVYHMTFHGDRVKPINVFLGSTDVTPNFGGV 172

Query: 193 DLVQ-LRPDHLARSAP 149
           D++  L  D   + AP
Sbjct: 173 DVIPWLLKDSPYKDAP 188


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -3

Query: 412 PSAAAYNFSLYLLVFKDSCFEFVDVSAREFVQ-FLAILNEDERRHRVNVVLAGDVLAL 242
           P++AA+   L   +F D+ FEF+    +E ++ FL +L E     R+  +L   VL L
Sbjct: 434 PNSAAHQSLLNTNMFNDANFEFM---VKEHIKNFLKLLKEHNNPVRIIKLLDCLVLTL 488


>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 115 ACFRQPCLQVVGIFD 71
           A F+QPCL+ +G FD
Sbjct: 34  ATFKQPCLEHMGKFD 48


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 337 SAREFVQFLAILNEDERRHRVNVVLAGDV 251
           S+RE + F  ++ ED R H  +V L GD+
Sbjct: 874 SSREGLGFRELIPEDIRAHFEDVGLPGDI 902


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 260 SEYNINSMPTFVFVKNGKKLD 322
           S Y +   P+F F+KNG K++
Sbjct: 175 SIYMLIGYPSFFFLKNGSKIE 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,606,249
Number of Sequences: 5004
Number of extensions: 26472
Number of successful extensions: 100
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)