Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10n03r
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769... 29 0.86
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247 28 1.5
11_06_0708 + 26475306-26478404 27 2.6
11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166 27 2.6
02_05_1320 - 35693575-35694846 27 2.6
12_02_0076 + 13284747-13285434,13285507-13285829 26 6.1
03_02_0583 + 9635002-9637299 26 6.1
12_02_0709 - 22359705-22360292,22360396-22360560,22360650-223611... 26 8.0
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012... 26 8.0
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 26 8.0
>06_02_0032 +
10775031-10775520,10775661-10776246,10776333-10776973,
10777270-10777973
Length = 806
Score = 29.1 bits (62), Expect = 0.86
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 174 IVIMSIGLTCFGLALGYIAYMRQKYESMGYYSAI 73
++ ++I L GL L Y+A R + ES GY+ A+
Sbjct: 752 VMNITIVLNLLGLLLAYMAGSRMRLESSGYFIAL 785
>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
Length = 974
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 177 NIVIMSIGLTCFGLALGYIAYMRQKYESMGYY 82
N++ ++I L GL L Y+A R + +S GY+
Sbjct: 908 NVMNITIVLDLLGLLLAYMAGSRMRLQSSGYF 939
>11_06_0708 + 26475306-26478404
Length = 1032
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = -1
Query: 311 LPFIENIKFCKQCQNHTMI-NLARVCDL----CDQLQHLE 207
LPF+ I F + CQ +I NL +V +L C L+H+E
Sbjct: 948 LPFLSGILFVQSCQGLEIISNLPQVRELLVNHCPNLRHVE 987
>11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166
Length = 940
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = -1
Query: 311 LPFIENIKFCKQCQNHTMI-NLARVCDL----CDQLQHLE 207
LPF+ I F + CQ +I NL +V +L C L+H+E
Sbjct: 764 LPFLSGILFVQSCQGLEIISNLPQVRELLVNHCPNLRHVE 803
>02_05_1320 - 35693575-35694846
Length = 423
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -3
Query: 228 RSTTAFRVVNFELYAKPNIVIMSIGLTCFGLALGYIAYMRQKYESMGYYSAIDKD 64
R+ AFR + EL KP++V ++ L F +A G +A R ++ M + ++ D
Sbjct: 164 RAIQAFRTLPAELGIKPSVVSHNVLLKSF-VASGDLASARALFDEMPSKADVEPD 217
>12_02_0076 + 13284747-13285434,13285507-13285829
Length = 336
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 87 YYSAIDKDGKEIFEKKKSKWD 25
Y + +KD K+IF++ K+ WD
Sbjct: 245 YLDSTEKDVKKIFDRFKNDWD 265
>03_02_0583 + 9635002-9637299
Length = 765
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 164 IMTILGFAYSSKLTTLNAVVDRIDR 238
IM +LG + + K T ++A+ DRI R
Sbjct: 144 IMAVLGASGAGKTTLIDALADRIQR 168
>12_02_0709 -
22359705-22360292,22360396-22360560,22360650-22361157,
22361159-22361577,22362261-22362722,22362853-22364415
Length = 1234
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 302 IENIKFCKQCQNHTMINLARVCDLCDQLQH 213
+ NI CKQCQ++ +++ + ++ Q QH
Sbjct: 374 VNNIIICKQCQSNKKLHMQAI-NIFTQQQH 402
>07_03_1762 -
29299328-29299437,29299782-29299871,29300487-29301291,
29301956-29303278
Length = 775
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 299 ENIKFCKQCQNHTMINLARVCDLCDQLQH 213
EN+ C +C NL +CD+CD H
Sbjct: 458 ENV-VCIECNRGGDDNLMLLCDICDSSAH 485
>01_06_1801 -
39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 29 HFDFFFSKISFPSLSIAE*YPIDSYFCRMYAMYPRA 136
HFD +++ L E YP ++ FC++ ++P++
Sbjct: 204 HFDLDPNRVFDIVLECFELYPDNTIFCQLIPLFPKS 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,649,752
Number of Sequences: 37544
Number of extensions: 158506
Number of successful extensions: 374
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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