Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n03r
         (326 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_57641| Best HMM Match : FYVE (HMM E-Value=2.9)                      29   1.2  
SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)                 27   2.7  
SB_27281| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.6  
SB_11829| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)                26   6.3  
SB_28466| Best HMM Match : Drf_FH1 (HMM E-Value=2.1)                   26   6.3  
SB_30069| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  

>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 143 KHVSPMLIMTILGFAYSSKLTTLNAVVDRIDRKPSPGLS 259
           +HVS  ++  +L + Y+SK  T  + VDRI R    G +
Sbjct: 140 EHVSSEVLGNLLRWRYNSKFLTTGSPVDRIPRYTQLGFT 178


>SB_57641| Best HMM Match : FYVE (HMM E-Value=2.9)
          Length = 97

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 302 IENIKFCKQCQNHTMINLARVCDLCDQL-QHLEW 204
           +E  KF   CQ   ++ L  +CDLC  L  HL +
Sbjct: 23  VETRKFTINCQRLCLVCLMTICDLCRMLDDHLRF 56


>SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)
          Length = 683

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -3

Query: 252 PGEGLRSMRSTTAFRVVNFEL-YAKPNIVIMSIGLTCFGLALGY-IAYMRQKYESM 91
           PG+ L S  S   + +V F L Y  P IVIM       G  L Y IA++R  +  +
Sbjct: 187 PGDSLSSFPSYRTYHMVRFMLNYILP-IVIMIAAYGALGFRLKYHIAFIRTVHSEL 241


>SB_27281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 436

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +2

Query: 89  PIDSYFCRMYAMYPRAKPKHVSPMLIMTILGFAYSSKLTTLNAVVDRI-----DRKPSPG 253
           P++ + CR  A+Y +  P     +L+   L + + +  T    V+ ++     + KPSP 
Sbjct: 267 PLEEFLCRKAALYKKTPPSEDDCLLLALELLYVWRAFYTCSQPVLHKMLQDLRNSKPSPQ 326

Query: 254 L 256
           L
Sbjct: 327 L 327


>SB_11829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 296 NIKFCKQCQNHTMINLARVCDLCDQLQH 213
           N+ +C  CQ+     +A  C  C QL+H
Sbjct: 124 NVCYCSMCQHKVAQQVACNCPSCLQLRH 151


>SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)
          Length = 594

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 323 IALRLPFIENIKFCKQ--CQNHTMINLARVCDLCDQL 219
           I+L+    ++   CK   CQ+H    L  +CD CD+L
Sbjct: 137 ISLQEATAKSTTSCKSHYCQHHKEEKLILLCDTCDKL 173


>SB_28466| Best HMM Match : Drf_FH1 (HMM E-Value=2.1)
          Length = 331

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 255 KP-GEGLRSMRSTTAFRVVNFELYAKPNIVIMSIGLTCF 142
           KP GE  +   + +A  VV  E  +K NIV  + G TCF
Sbjct: 181 KPAGEVEQEETAKSADEVVPCESISKKNIVFRTTGTTCF 219


>SB_30069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 140 VWL*DTLHTCDKNMNQWDIILLLIKMEKRFLKRR 39
           V+  DT +TC++ +  W  + LL+  +    KRR
Sbjct: 50  VYTSDTFYTCERELGLWRALPLLVPNDHLPNKRR 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,511,821
Number of Sequences: 59808
Number of extensions: 199313
Number of successful extensions: 442
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)