Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n03r
         (326 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49590.2 68416.m05420 expressed protein                             27   3.0  
At3g49590.1 68416.m05419 expressed protein                             27   3.0  
At1g29170.1 68414.m03569 expressed protein ; expression supporte...    27   3.9  
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam...    26   5.2  
At1g71960.1 68414.m08318 ABC transporter family protein similar ...    26   5.2  
At5g58460.1 68418.m07321 cation/hydrogen exchanger, putative (CH...    25   9.0  
At5g46110.1 68418.m05669 phosphate/triose-phosphate translocator...    25   9.0  
At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containi...    25   9.0  

>At3g49590.2 68416.m05420 expressed protein 
          Length = 603

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 227 RIDRKPSPGLSSCGFDIVYKI 289
           R+ R+ S  L+S G+D++YK+
Sbjct: 166 RVSRQLSSSLASSGYDLIYKV 186


>At3g49590.1 68416.m05419 expressed protein 
          Length = 603

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 227 RIDRKPSPGLSSCGFDIVYKI 289
           R+ R+ S  L+S G+D++YK+
Sbjct: 166 RVSRQLSSSLASSGYDLIYKV 186


>At1g29170.1 68414.m03569 expressed protein ; expression supported
           by MPSS
          Length = 1016

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 191 SSKLTTLNAVVDRIDRKPSPGLSSCGFD 274
           +S++   N+VVD +D KPS G    G D
Sbjct: 337 ASEMVEANSVVDTLDEKPSYGEGIGGVD 364


>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 883

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 299 ENIKFCKQCQNHTMINLARVCDLCDQLQH 213
           ENI  C +C       L  +CDLCD   H
Sbjct: 502 ENI-ICTECHQGDDDGLMLLCDLCDSSAH 529


>At1g71960.1 68414.m08318 ABC transporter family protein similar to
           breast cancer resistance protein GB:AAC97367 from [Homo
           sapiens]
          Length = 662

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 149 VSPMLIMTILGFAYSSKLTTLNAVVDRI 232
           +SP   M +LG + S K T LNAV  R+
Sbjct: 91  ISPGEFMAVLGPSGSGKSTLLNAVAGRL 118


>At5g58460.1 68418.m07321 cation/hydrogen exchanger, putative
           (CHX25) similar to Na+/H+-exchanging protein slr1595,
           Synechocystis sp., PIR:S74951; monovalent cation:proton
           antiporter family 2 (CPA2) member, PMID:11500563
          Length = 857

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 140 PKHVSPMLIMTILGFAYSSKLTTLNAVVDRIDRKPS 247
           PK +SP++ M+I+GF      +T  A+  ++  + S
Sbjct: 378 PKQISPLIYMSIVGFVTKFVSSTGAALFFKVPTRDS 413


>At5g46110.1 68418.m05669 phosphate/triose-phosphate translocator,
           putative identical to phosphate/triose-phosphate
           translocator precursor [Arabidopsis thaliana]
           gi|3983125|gb|AAC83815; similar to triose
           phosphate/phosphate translocator, chloroplast precursor
           (CTPT)[Cauliflower]{Brassica oleracea} SWISS-PROT:P52177
          Length = 410

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/43 (20%), Positives = 24/43 (55%)
 Frame = +3

Query: 3   FYKFYNFNPILISSFQKSLFHLYQ*QNNIPLIHIFVACMQCIL 131
           F+ +Y  N ++ +   K +++ +     + +IH+FV  + C++
Sbjct: 112 FFMWYFLN-VIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLI 153


>At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 904

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 260 MINLARVCDLCDQLQHLEWSI 198
           M+ + + CDL D+LQHL + I
Sbjct: 635 MLRIYQKCDLQDKLQHLYYRI 655


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,442,201
Number of Sequences: 28952
Number of extensions: 142314
Number of successful extensions: 361
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 370553816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)