Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n03f
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   0.75 
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    26   2.3  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   3.0  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    24   9.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   9.3  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.5 bits (58), Expect = 0.75
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +3

Query: 162  MSIGLTCFGLALGYIAYMRQKYESMGYYSAIDKDGKEIFEKKKSKWD*NYRICKNCK 332
            +++G     L+LG   + R   +S+GY   + +  K++  + K ++D N+     CK
Sbjct: 898  LTVGSDAVCLSLGDSQFHRLSCDSVGYNIEVKRYVKKVSGQGKMRYDYNFWSKNECK 954


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +3

Query: 99  RSTTAFRVVNFELYAKPNI-VIMSIGLTCFGLALGYIAYMRQKYESMGYYSAIDKDGKEI 275
           R    +RV N E+Y +PN  V+  +G   +G+         +  E++      +   K I
Sbjct: 3   RRHRVYRVFNQEMYVEPNFKVVKELGQGAYGIVCAARNVASKDQEAVAIKKITNVFSKSI 62

Query: 276 FEKK 287
             K+
Sbjct: 63  LTKR 66


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 120 VVNFELYAKPNIVIMSIGLTCFGLALGYIAY 212
           V+N +LYA P + + S G+  + + +G + +
Sbjct: 201 VINGKLYAGPEVDVWSCGIVLYVMLVGRLPF 231


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 349  QYINSYLQFLQIL*FQSHFDFFFSKISFPSL 257
            Q + S   ++ +L  Q H +F F+ ++FPS+
Sbjct: 921  QLVRSLKPYISVL-KQDHQEFIFAGLNFPSV 950


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 190  WL*DTLHTCDKNMNQWDIILLLIKME 267
            WL D    C + +NQWD++    K E
Sbjct: 2595 WL-DHWILCAQKLNQWDVLFDFSKQE 2619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,552,715
Number of Sequences: 5004
Number of extensions: 30740
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)