Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n03f
         (382 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46674-4|AAA85756.1|  574|Caenorhabditis elegans Hypothetical pr...    28   2.6  
U39994-2|AAB37017.1|  378|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U00056-1|AAN65308.2|  476|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AY349016-1|AAQ55496.1|  394|Caenorhabditis elegans NHR-41 protein.     27   6.0  
AY349015-1|AAQ55495.1|  459|Caenorhabditis elegans NHR-41B protein.    27   6.0  
AY349014-1|AAQ55494.1|  583|Caenorhabditis elegans NHR-41A protein.    27   6.0  
AC024882-4|AAF60933.2|  338|Caenorhabditis elegans Seven tm rece...    26   7.9  

>U46674-4|AAA85756.1|  574|Caenorhabditis elegans Hypothetical
           protein T26A8.4 protein.
          Length = 574

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 193 AKPKHVSPMLIMTILGFAYSSKLTTLNAVVDRIDRKPSPGL 71
           + P H +P++   I   ++ S+L     VV  I R P PG+
Sbjct: 307 SSPPHATPVIHAPIPQASHPSQLPPPAVVVPTIQRNPGPGI 347


>U39994-2|AAB37017.1|  378|Caenorhabditis elegans Hypothetical
           protein C48C5.1 protein.
          Length = 378

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -1

Query: 379 FFYFNHYLLLQYINSYLQFL 320
           FFYF++ ++L ++N Y+ F+
Sbjct: 306 FFYFDNEVILTWVNQYMYFI 325


>U00056-1|AAN65308.2|  476|Caenorhabditis elegans Hypothetical
           protein R05H11.1 protein.
          Length = 476

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = +3

Query: 204 IAYMRQKYESMGYYSAIDKDGKEI-----FEKKKSKWD*NYRICK 323
           + + + KY +  +YS  DKDGK       +  K SK+  NY  CK
Sbjct: 78  VYFEKYKYNACVFYSWRDKDGKRTIWNNSYYLKSSKFQ-NYMFCK 121


>AY349016-1|AAQ55496.1|  394|Caenorhabditis elegans NHR-41 protein.
          Length = 394

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 250 AE*YPID--SYFCRMYAMYPRAKPKHVSPMLIMTILGFAYSSKLTTLNAVV 104
           AE  P++  S  C          P+H+SP L+++++   + +KL  L A++
Sbjct: 3   AERRPVNNSSMLCNNDNNQQNTTPEHLSPNLLLSLVKLEHETKLGGLEALI 53


>AY349015-1|AAQ55495.1|  459|Caenorhabditis elegans NHR-41B protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 250 AE*YPID--SYFCRMYAMYPRAKPKHVSPMLIMTILGFAYSSKLTTLNAVV 104
           AE  P++  S  C          P+H+SP L+++++   + +KL  L A++
Sbjct: 100 AERRPVNNSSMLCNNDNNQQNTTPEHLSPNLLLSLVKLEHETKLGGLEALI 150


>AY349014-1|AAQ55494.1|  583|Caenorhabditis elegans NHR-41A protein.
          Length = 583

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 250 AE*YPID--SYFCRMYAMYPRAKPKHVSPMLIMTILGFAYSSKLTTLNAVV 104
           AE  P++  S  C          P+H+SP L+++++   + +KL  L A++
Sbjct: 224 AERRPVNNSSMLCNNDNNQQNTTPEHLSPNLLLSLVKLEHETKLGGLEALI 274


>AC024882-4|AAF60933.2|  338|Caenorhabditis elegans Seven tm
           receptor protein 158 protein.
          Length = 338

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 129 FELYAKPNIVIMSIGLTCFGLALGYIA 209
           FELY K ++ ++  G +CFG+ +  IA
Sbjct: 84  FELYPKISLFLIVGGTSCFGVTIYAIA 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,528,877
Number of Sequences: 27780
Number of extensions: 171531
Number of successful extensions: 411
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)