Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n03f
         (382 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   3.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   3.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   3.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   3.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   3.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   4.9  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    20   8.5  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 183 FGLALGYIAYMRQKYESMGYY 245
           + +A+G  A M++ Y ++ YY
Sbjct: 178 YNIAMGDTADMKKTYNNIDYY 198


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 162 MSIGLTCFGLALGYIAYMRQKYES 233
           M  G TC+ L LG+   + Q  +S
Sbjct: 360 MISGATCYALFLGHATNLIQSLDS 383



 Score = 20.2 bits (40), Expect = 8.5
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +1

Query: 205 LHTCDKNMNQWDIILLLI 258
           +H C      WD+ +LL+
Sbjct: 81  IHPCSSFRFYWDLCMLLL 98


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 183 FGLALGYIAYMRQKYESMGYY 245
           + +A+G  A M++ Y ++ YY
Sbjct: 178 YNIAMGDTADMKKTYNNIDYY 198


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 162 MSIGLTCFGLALGYIAYMRQKYES 233
           M  G TC+ L LG+   + Q  +S
Sbjct: 328 MISGATCYALFLGHATNLIQSLDS 351



 Score = 20.2 bits (40), Expect = 8.5
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +1

Query: 205 LHTCDKNMNQWDIILLLI 258
           +H C      WD+ +LL+
Sbjct: 81  IHPCSSFRFYWDLCMLLL 98


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 222 KYESMGYYSAIDKDGKEIFEKKKS 293
           +++ M +Y +  +DGK   EKK++
Sbjct: 787 EFDEMSFYYSPVEDGKIYSEKKET 810


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 48  FTKFDIFYEWKS 13
           +TK D+ Y+W S
Sbjct: 153 YTKRDVIYKWNS 164


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +1

Query: 205 LHTCDKNMNQWDIILLLI 258
           +H C      WD+ +LL+
Sbjct: 81  IHPCSSFRFYWDLCMLLL 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,053
Number of Sequences: 438
Number of extensions: 2170
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)