Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n03f
         (382 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49590.2 68416.m05420 expressed protein                             27   4.2  
At3g49590.1 68416.m05419 expressed protein                             27   4.2  
At1g29170.1 68414.m03569 expressed protein ; expression supporte...    27   5.6  
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam...    26   7.4  
At1g71960.1 68414.m08318 ABC transporter family protein similar ...    26   7.4  

>At3g49590.2 68416.m05420 expressed protein 
          Length = 603

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 100 RIDRKPSPGLSSCGFDIVYKI 38
           R+ R+ S  L+S G+D++YK+
Sbjct: 166 RVSRQLSSSLASSGYDLIYKV 186


>At3g49590.1 68416.m05419 expressed protein 
          Length = 603

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 100 RIDRKPSPGLSSCGFDIVYKI 38
           R+ R+ S  L+S G+D++YK+
Sbjct: 166 RVSRQLSSSLASSGYDLIYKV 186


>At1g29170.1 68414.m03569 expressed protein ; expression supported
           by MPSS
          Length = 1016

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 136 SSKLTTLNAVVDRIDRKPSPGLSSCGFD 53
           +S++   N+VVD +D KPS G    G D
Sbjct: 337 ASEMVEANSVVDTLDEKPSYGEGIGGVD 364


>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 883

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 28  ENIKFCKQCQNHTMINLARVCDLCDQLQH 114
           ENI  C +C       L  +CDLCD   H
Sbjct: 502 ENI-ICTECHQGDDDGLMLLCDLCDSSAH 529


>At1g71960.1 68414.m08318 ABC transporter family protein similar to
           breast cancer resistance protein GB:AAC97367 from [Homo
           sapiens]
          Length = 662

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 178 VSPMLIMTILGFAYSSKLTTLNAVVDRI 95
           +SP   M +LG + S K T LNAV  R+
Sbjct: 91  ISPGEFMAVLGPSGSGKSTLLNAVAGRL 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,813,753
Number of Sequences: 28952
Number of extensions: 151564
Number of successful extensions: 379
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)