Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n01r
         (757 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)                130   1e-30
SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)                 36   0.036
SB_7982| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.44 
SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.44 
SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.76 
SB_24517| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)                 29   5.4  
SB_37805| Best HMM Match : DoxA (HMM E-Value=1.7)                      29   5.4  
SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2)                   28   7.1  
SB_32654| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_25450| Best HMM Match : 7tm_1 (HMM E-Value=0.088)                   28   7.1  
SB_17656| Best HMM Match : TIR (HMM E-Value=1.3)                       28   9.4  

>SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)
          Length = 142

 Score =  130 bits (314), Expect = 1e-30
 Identities = 56/132 (42%), Positives = 94/132 (71%), Gaps = 1/132 (0%)
 Frame = -2

Query: 456 IQYIEDTRPEPKLMP-DTALQRARMREICETIVSGIQPLQNFGLKKHLGTEEKFLSFTKY 280
           ++Y+++TRP+P L+P     +RA +R+I  TI SGIQP+QN  + +++G ++K + +  Y
Sbjct: 1   MEYLDETRPDPPLLPRGDPHKRALVRQISMTIASGIQPIQNLKVLQYVGPDKK-VEWGHY 59

Query: 279 WTERGLQTLNDLLAKTSGAYCIGDQITLADICLVPQIYNGVSRHKLDLKTYPIVSKVYEN 100
           W +RG Q L  +L +T+G YC+GD IT+AD+CLVPQ+YN  +R K+D+  YP +++++E 
Sbjct: 60  WIDRGFQCLEKMLVQTAGKYCVGDDITMADLCLVPQVYN-ANRFKVDMSRYPTIARIHEA 118

Query: 99  LLKEELFQATHP 64
           L + + F+  HP
Sbjct: 119 LEQVDAFKEAHP 130


>SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)
          Length = 195

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
 Frame = -2

Query: 336 FGLKKHLGTEEKFLSFTKYWTERGLQTLNDLLAKTSGA--YCIGDQITLADICLVPQIYN 163
           F  ++H+  E+K   F +    + L+ +N L  +  G   Y +GD+IT ADI      +N
Sbjct: 89  FFKREHV-KEQKSKEFHEETLPKRLEFINKLFQENKGGKGYLVGDKITYADIDFF-CFFN 146

Query: 162 G-VSRHKLD----LKTYPIVSKVYENLLKEE 85
           G ++  KLD    L  YP++  +Y  ++ E+
Sbjct: 147 GFINSGKLDVPEQLSKYPLLVDLYNRVMNEK 177


>SB_7982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 23/79 (29%), Positives = 36/79 (45%)
 Frame = +2

Query: 263 SPLSVQYFVKLRNFSSVPKCFFRPKFCNGCIPDTIVSHISLIRARCSAVSGMSFGSGLVS 442
           SPL+ + F+++           R  FC GC   T V H     + C+A  GM +G  L S
Sbjct: 282 SPLNTR-FLRIFPLEYHHNISLRLGFC-GCSHKTAVHHPKTSASSCNASVGMEYGYYLPS 339

Query: 443 SMYCIIAIDSTKVTPSISR 499
           ++Y     +     PS++R
Sbjct: 340 NIYSSSEEEKKVYGPSLAR 358


>SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
 Frame = -2

Query: 264 LQTLNDLLAKTSGA--YCIGDQITLADICLVPQIYNG-VSRHKLDL----KTYPIVSKVY 106
           ++ +N LL + +G   Y +GD+IT ADI      +NG ++  KLD+      YP+++ +Y
Sbjct: 186 MENINKLLQENNGGKGYLVGDKITYADIDFF-CFFNGYINGGKLDVPEQFSKYPLLADLY 244

Query: 105 ENLLKE 88
             ++ +
Sbjct: 245 NRVMNK 250


>SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
 Frame = -2

Query: 672 ENRVILHAYWLSSCSWRVRAMLHAKSIPFEERPVDIVKTGKQLTEEYRAINPAQ-KVPAL 496
           +N++ L++      + R R +L AK + +E   V++    K   E ++     + KVP L
Sbjct: 27  QNKLRLYSMRFCPFAERPRLVLAAKGLDYECVNVNL----KSKPEWFQTHPDCEGKVPTL 82

Query: 495 E-IDGVTLVESMAIIQYIEDTRPEPKLMPDTALQRARMREICETIVSG 355
           E +DG  + ES+ I +++ED   +  L P     ++R + + +    G
Sbjct: 83  ETMDGKLIPESVIICEFLEDYYRKIPLYPCDPYAKSRQKLLAQRFDKG 130


>SB_24517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = -2

Query: 471 ESMAIIQYIEDTRPEPKLMPDTALQRARMREICETIVSG---IQPLQNFGLKKHLGTEEK 301
           E +A +Q I+  R + +L  +   +    +   E I+SG   + P  NF +K+    +  
Sbjct: 232 ELLAELQRIKKERAQEELRKEKQKKEEEEKVRMENIMSGNPLLNPQSNFKVKRRWDDDVV 291

Query: 300 FLSFTKYWTERGLQTLNDLL 241
           F +  K   E+G   +ND++
Sbjct: 292 FKNCAKGEDEKGQHFINDMI 311


>SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)
          Length = 221

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -2

Query: 618 RAMLHAKSIPFEERPVDIVKTGKQLTEEYRAINPAQK--VPALEIDGVTLVESMAIIQ 451
           R    A  IP+E    D+  TG++ T+  +A N      +P LE+DG+   ESMAI +
Sbjct: 19  RLCFAAGGIPYE----DVRLTGEEWTK-MKAENKTIMGYLPVLEVDGIQYCESMAIFR 71


>SB_37805| Best HMM Match : DoxA (HMM E-Value=1.7)
          Length = 788

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 273 ERGLQTLNDLLAKTSGAYCIGDQITLADICLVPQIY-NGVSRHKL 142
           E+ L+ ++ LL +  G Y  GD  T+ D  L+ ++Y  G +  KL
Sbjct: 48  EKELEHVDSLLGEEPGVYLEGDHPTINDYRLLAKLYQTGTAAEKL 92


>SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2)
          Length = 454

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 475 SRIYGDNTVHRRYET*TETHARHS-TTTRPYERNMRDYCIRY 353
           +R +G N      +T T+THARH  T TR    N+   CIRY
Sbjct: 303 TRTHGTNIHGLIPQTYTDTHARHKHTRTRTLGINIHG-CIRY 343


>SB_32654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = -2

Query: 372 ETIVSGIQPLQNFGLKKHL--GTEEKFLSFTKYWTERGLQTLNDLLAKTS 229
           +++V+ ++   N G +KH+  G ++K+L+  KY    GL  + D + +++
Sbjct: 143 DSLVTPVEGGSN-GKRKHVAEGMQKKYLALVKYLLSEGLDKMTDTIKRST 191


>SB_25450| Best HMM Match : 7tm_1 (HMM E-Value=0.088)
          Length = 163

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -2

Query: 243 LAKTSGAYCIGDQITLADICLVPQIYNGVSRHKL 142
           ++K S  + +G  + + D+C +  +Y G+S + L
Sbjct: 122 ISKQSSLHIVGALVFIFDLCFLVSVYEGISHYVL 155


>SB_17656| Best HMM Match : TIR (HMM E-Value=1.3)
          Length = 719

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 684 ATMVENRVILHAYWLSSCSWRVRAMLHAKSIPFEERPVDIVKTGKQL 544
           AT VEN  +L A+        V   L  K    +E+P+  +K  K L
Sbjct: 498 ATAVENSTMLVAFLTEKYQQSVNCNLELKYATMKEKPIIFIKAEKDL 544


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,939,894
Number of Sequences: 59808
Number of extensions: 486575
Number of successful extensions: 1314
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)