Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10n01f
(630 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05) 107 6e-24
SB_7982| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_24517| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15) 29 4.1
SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2) 28 5.4
SB_32654| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18) 28 5.4
SB_17656| Best HMM Match : TIR (HMM E-Value=1.3) 28 7.2
SB_52289| Best HMM Match : SH3_1 (HMM E-Value=3.5e-13) 27 9.5
>SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)
Length = 142
Score = 107 bits (258), Expect = 6e-24
Identities = 46/99 (46%), Positives = 73/99 (73%), Gaps = 1/99 (1%)
Frame = +1
Query: 325 IQYIEDTRPEPKLMP-DTALQRARMREICETIVSGIQPLQNFGLKKHLGTEEKFLSFTKY 501
++Y+++TRP+P L+P +RA +R+I TI SGIQP+QN + +++G ++K + + Y
Sbjct: 1 MEYLDETRPDPPLLPRGDPHKRALVRQISMTIASGIQPIQNLKVLQYVGPDKK-VEWGHY 59
Query: 502 WTERGLQTLNDLLAKTSGAYCIGDQITLADICLVPQIYN 618
W +RG Q L +L +T+G YC+GD IT+AD+CLVPQ+YN
Sbjct: 60 WIDRGFQCLEKMLVQTAGKYCVGDDITMADLCLVPQVYN 98
>SB_7982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 32.3 bits (70), Expect = 0.33
Identities = 23/79 (29%), Positives = 36/79 (45%)
Frame = -2
Query: 518 SPLSVQYFVKLRNFSSVPKCFFRPKFCNGCIPDTIVSHISLIRARCSAVSGMSFGSGLVS 339
SPL+ + F+++ R FC GC T V H + C+A GM +G L S
Sbjct: 282 SPLNTR-FLRIFPLEYHHNISLRLGFC-GCSHKTAVHHPKTSASSCNASVGMEYGYYLPS 339
Query: 338 SMYCIIAIDSTKVTPSISR 282
++Y + PS++R
Sbjct: 340 NIYSSSEEEKKVYGPSLAR 358
>SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 31.5 bits (68), Expect = 0.58
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Frame = +1
Query: 109 ENRVILHAYWLSSCSWRVRAMLHAKSIPFEERPVDIVKTGKQLTEEYRAINPAQ-KVPAL 285
+N++ L++ + R R +L AK + +E V++ K E ++ + KVP L
Sbjct: 27 QNKLRLYSMRFCPFAERPRLVLAAKGLDYECVNVNL----KSKPEWFQTHPDCEGKVPTL 82
Query: 286 E-IDGVTLVESMAIIQYIEDTRPEPKLMPDTALQRARMREICETIVSG 426
E +DG + ES+ I +++ED + L P ++R + + + G
Sbjct: 83 ETMDGKLIPESVIICEFLEDYYRKIPLYPCDPYAKSRQKLLAQRFDKG 130
>SB_24517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +1
Query: 310 ESMAIIQYIEDTRPEPKLMPDTALQRARMREICETIVSG---IQPLQNFGLKKHLGTEEK 480
E +A +Q I+ R + +L + + + E I+SG + P NF +K+ +
Sbjct: 232 ELLAELQRIKKERAQEELRKEKQKKEEEEKVRMENIMSGNPLLNPQSNFKVKRRWDDDVV 291
Query: 481 FLSFTKYWTERGLQTLNDLL 540
F + K E+G +ND++
Sbjct: 292 FKNCAKGEDEKGQHFINDMI 311
>SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)
Length = 221
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 163 RAMLHAKSIPFEERPVDIVKTGKQLTEEYRAINPAQK--VPALEIDGVTLVESMAIIQ 330
R A IP+E D+ TG++ T+ +A N +P LE+DG+ ESMAI +
Sbjct: 19 RLCFAAGGIPYE----DVRLTGEEWTK-MKAENKTIMGYLPVLEVDGIQYCESMAIFR 71
>SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2)
Length = 454
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 306 SRIYGDNTVHRRYET*TETHARHS-TTTRPYERNMRDYCIRY 428
+R +G N +T T+THARH T TR N+ CIRY
Sbjct: 303 TRTHGTNIHGLIPQTYTDTHARHKHTRTRTLGINIHG-CIRY 343
>SB_32654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +1
Query: 409 ETIVSGIQPLQNFGLKKHL--GTEEKFLSFTKYWTERGLQTLNDLLAKTS 552
+++V+ ++ N G +KH+ G ++K+L+ KY GL + D + +++
Sbjct: 143 DSLVTPVEGGSN-GKRKHVAEGMQKKYLALVKYLLSEGLDKMTDTIKRST 191
>SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)
Length = 195
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 445 FGLKKHLGTEEKFLSFTKYWTERGLQTLNDLLAKTSGA--YCIGDQITLADI 594
F ++H+ E+K F + + L+ +N L + G Y +GD+IT ADI
Sbjct: 89 FFKREHV-KEQKSKEFHEETLPKRLEFINKLFQENKGGKGYLVGDKITYADI 139
>SB_17656| Best HMM Match : TIR (HMM E-Value=1.3)
Length = 719
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 97 ATMVENRVILHAYWLSSCSWRVRAMLHAKSIPFEERPVDIVKTGKQL 237
AT VEN +L A+ V L K +E+P+ +K K L
Sbjct: 498 ATAVENSTMLVAFLTEKYQQSVNCNLELKYATMKEKPIIFIKAEKDL 544
>SB_52289| Best HMM Match : SH3_1 (HMM E-Value=3.5e-13)
Length = 803
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 500 YFVKLRNFSSVPKCFFRPKFC 438
+F K R+FS +P FFR FC
Sbjct: 721 FFWKHRHFSQIPAGFFRLDFC 741
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,598,851
Number of Sequences: 59808
Number of extensions: 411520
Number of successful extensions: 1176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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