Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n01f
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 241 QLAVYQFLQYPPDVLRKVC 185
           Q  VYQF+  P D++   C
Sbjct: 533 QRLVYQFVDVPKDIIEIDC 551


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 280 LVLFALD*WLCTLQLAVYQFLQYPPDVLRKVCFLHVALL 164
           L+L  LD   CT++  +   +   P +LRK   L +A++
Sbjct: 384 LILIGLDSQFCTVEGFITAAVDEWPRLLRKRKELFIAIV 422


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 280 LVLFALD*WLCTLQLAVYQFLQYPPDVLRKVCFLHVALL 164
           L+L  LD   CT++  +   +   P +LRK   L +A++
Sbjct: 437 LILIGLDSQFCTVEGFITAAVDEWPRLLRKRKELFIAIV 475


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 162 SSNATCKKHTFRRTSGG 212
           S++ TC  HT R  +GG
Sbjct: 287 SASTTCSGHTVRCFTGG 303


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 68  IQQFFAPFLFTIVFS 24
           IQ+F A F FT+V++
Sbjct: 723 IQRFAAGFCFTVVYA 737


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 168 NATCKKHTFRRTSGGYCK 221
           NAT   HT R  +G Y K
Sbjct: 17  NATNSPHTCRTKNGDYTK 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,656
Number of Sequences: 438
Number of extensions: 4022
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)