Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10m24r
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480 31 1.4
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 31 1.4
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159... 30 2.4
01_07_0133 + 41335752-41336021,41336123-41336290 30 2.4
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249... 29 3.2
09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,250... 28 7.3
08_01_0007 - 57681-57728,58260-58336,58418-58464,58808-58908,590... 28 7.3
09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468 28 9.6
05_01_0565 - 4926137-4926847,4926928-4927257 28 9.6
02_02_0625 - 12339623-12339707,12339938-12340062,12340844-123409... 28 9.6
01_06_1580 - 38406740-38407257,38407481-38407552,38408309-384083... 28 9.6
>11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480
Length = 910
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Frame = -2
Query: 470 HSDFTKLRTMLISTHMQDLKDVTQDVHYENFRA-----QCISQISQHAMRERGKLKRDSM 306
H + TKLR + D +DV ++ YE R + + + H + + L+ + +
Sbjct: 70 HEESTKLRLKELKELAYDAEDVVEEYEYEVNRCKVEALELSASTADHKRKRQQNLENEDL 129
Query: 305 GNNNDVVITD----TDRLLLQKDEEIRRMQDMLT 216
N+ V + D R L+++ EI+ D T
Sbjct: 130 FNSGMVAVPDELAVKTRKLIERFHEIKYYSDNFT 163
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -2
Query: 296 NDVVITDTDRLLLQKDEEIRRMQDMLTQMQQKLKASDKKHDSI 168
N + T +LL +KD IR +++ L Q +L A +KK + +
Sbjct: 1389 NSAELERTKKLLSEKDSVIRNLEEKLAGCQSELDAREKKLNDV 1431
>02_05_1041 -
33713561-33714564,33714844-33714904,33715640-33715951,
33716780-33716917
Length = 504
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = -2
Query: 326 KLKRDSMGNNNDVVITDTDRLLLQKDEEIRRMQDMLTQMQQKLKASDK 183
K K+DS G N + R LL D+E++ ++ + ++++ +K + K
Sbjct: 412 KSKKDSSGEANGHAKKEDRRSLLAYDDEVKELRSRVEKLEEMMKRNRK 459
>01_07_0133 + 41335752-41336021,41336123-41336290
Length = 145
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 689 ARILNDLEEHQIQVYQFPECDSDEDEDFKQQ---DRELKEAAPFAVVASDIVLEMGGKRV 519
AR+ +DL+E ++ + + +E+EDF+Q + E ++A A V + VL R
Sbjct: 77 ARVADDLDERFLREMESNKAIMEENEDFEQDGGGEEEEEDAEQPAPVEKEGVLVAAAPRT 136
Query: 518 RGR 510
R R
Sbjct: 137 RNR 139
>04_04_0779 -
28023735-28024058,28024520-28024618,28024704-28024940,
28025227-28025334,28025427-28025486,28025813-28025888,
28025984-28026144,28026374-28026436,28026543-28026630,
28026872-28027612,28027695-28028239
Length = 833
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +1
Query: 415 RSCMCVEINIVLSLVK--SECRGFSTSTIPHGYCLPRT-LLPPISRTISEAT 561
+SC ++ S K S C+ FS PH + LP + PP++RT+S+ T
Sbjct: 54 KSCRSTTVSRPTSPSKEVSRCQSFSADR-PHAHPLPIPGVRPPVTRTVSDIT 104
>09_01_0175 -
2509014-2509064,2509389-2509490,2509603-2509729,
2509852-2511564,2512335-2512424,2512533-2512801,
2513118-2513687,2513703-2514065
Length = 1094
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = -2
Query: 392 HYENFRAQCISQISQHAMRER----GKLKRD-SMGNNNDVVITDTDRLLLQKDEEIRRMQ 228
HY NF S+H E+ G K + S G+N D+ I T + +DE +
Sbjct: 568 HYNNFEGA--EDESKHRGNEKSSKDGITKENGSKGSNEDIFIDPTVLKHMDRDELVAHFN 625
Query: 227 DMLTQMQQK 201
M+ QM+++
Sbjct: 626 KMMNQMKRQ 634
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/98 (19%), Positives = 40/98 (40%)
Frame = -2
Query: 461 FTKLRTMLISTHMQDLKDVTQDVHYENFRAQCISQISQHAMRERGKLKRDSMGNNNDVVI 282
F K+ + H L++ T+++ + + + + + R + + M VI
Sbjct: 624 FNKMMNQMKRQHDSTLQEKTEEIF--RLKRENLKKEGPNPWHLRNNKEFELMRKKIWEVI 681
Query: 281 TDTDRLLLQKDEEIRRMQDMLTQMQQKLKASDKKHDSI 168
T D +L++ IR D+ Q K+K D + +
Sbjct: 682 TKLDEVLVENKRTIRIKSDVFPGQQDKIKVVDSHNHQL 719
>08_01_0007 -
57681-57728,58260-58336,58418-58464,58808-58908,
59016-59108,59418-59540,59637-59755,60154-60510,
60888-61011
Length = 362
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Frame = -2
Query: 473 RHSDFTKLRTMLISTHMQDLKDVTQDVHYENFRAQCISQISQHAMRERGKLKRDSMGNNN 294
+ SD + R + H + + + + + RA + ++ + R +L + +GN
Sbjct: 207 KSSDELETRNSNVEFHSETVGTLPESKQGHDSRATKLLNSGEYQVILRKELTKSDVGNVG 266
Query: 293 DVVITDTDRL-----LLQKDEEIRRMQDMLTQMQQKLK 195
+V+ D LLQ+D I M DM+ + K K
Sbjct: 267 RIVLPKKDAEASLPPLLQRDPLILHMDDMVLPVTWKFK 304
>09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468
Length = 1078
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -2
Query: 266 LLLQKDEEIRRMQDMLTQMQQKLKASDKKH 177
L+L +EIR++ D L +++ L+ ++KKH
Sbjct: 26 LMLGVSDEIRKLYDTLNSLKKFLQDAEKKH 55
>05_01_0565 - 4926137-4926847,4926928-4927257
Length = 346
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -3
Query: 775 WSVCIAK*T-SWWLSQKRTLLRRSK*NDSRHEYLTILKNTRYKYT 644
W ++K W+L +K+ + ++K H Y T + N R++ T
Sbjct: 17 WPTVMSKFVLDWYLQKKKEMPPKTKFKKMHHHYCTTVLNARFETT 61
>02_02_0625 -
12339623-12339707,12339938-12340062,12340844-12340996,
12342037-12342102,12343374-12343443,12343523-12343593,
12343664-12343795,12344042-12344130,12344189-12344270,
12344743-12344811,12345641-12345730,12345856-12345918,
12346158-12346217
Length = 384
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = -2
Query: 752 NIVVVIAKADSLTAIEIKRLKARILNDLEEHQIQVYQFPECDSDEDED 609
N++ + + A + AI +K++ + ++ L + QV ECDS +D D
Sbjct: 283 NVLTLFSTAATTKAI-VKKMSSEVVQLLLANAYQVCLHLECDSSKDSD 329
>01_06_1580 -
38406740-38407257,38407481-38407552,38408309-38408365,
38408476-38408532,38408643-38408699,38408809-38408865,
38409371-38409424,38409744-38409800,38410023-38410076,
38412208-38412220,38413530-38413580,38414134-38414193,
38414640-38414761,38415033-38415894,38416468-38416667,
38417159-38417238,38417525-38417619
Length = 821
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2
Query: 635 ECDSDEDEDFKQQDRELKEAAPFAVVASDIVL 540
+ DSDEDED + E + AAP A A D+V+
Sbjct: 679 DSDSDEDEDPHPEQHEPERAAPRA--AMDVVM 708
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,257,462
Number of Sequences: 37544
Number of extensions: 350223
Number of successful extensions: 1116
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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