Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10m24r
(783 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical pr... 144 6e-35
AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical... 120 1e-27
AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical... 120 1e-27
AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical... 120 1e-27
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 32 0.40
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 31 1.2
AF078789-3|AAK68487.1| 295|Caenorhabditis elegans Hypothetical ... 30 2.1
AF078789-2|AAK21516.1| 318|Caenorhabditis elegans Hypothetical ... 30 2.1
Z75535-3|CAH04733.1| 495|Caenorhabditis elegans Hypothetical pr... 29 3.7
U97193-13|AAO38676.1| 215|Caenorhabditis elegans Hypothetical p... 29 5.0
U97193-12|AAB52441.1| 283|Caenorhabditis elegans Hypothetical p... 29 5.0
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 29 5.0
Z81050-1|CAB02850.1| 582|Caenorhabditis elegans Hypothetical pr... 28 6.6
U97009-5|AAC69036.2| 505|Caenorhabditis elegans Nuclear hormone... 28 6.6
AF003740-1|AAM15561.2| 488|Caenorhabditis elegans Hypothetical ... 28 6.6
Z81496-6|CAB04070.2| 313|Caenorhabditis elegans Hypothetical pr... 28 8.7
U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical pr... 28 8.7
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 28 8.7
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 28 8.7
>Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical
protein W09C5.2 protein.
Length = 459
Score = 144 bits (349), Expect = 6e-35
Identities = 80/215 (37%), Positives = 126/215 (58%), Gaps = 9/215 (4%)
Frame = -2
Query: 782 EMMERLHRKVNIVVVIAKADSLTAIEIKRLKARILNDLEEHQIQVYQFPECDSDEDEDFK 603
E+M+ LH +VNIV VI+KAD LT E+ R K +I+ D E +I++Y+FPE + + K
Sbjct: 178 ELMKHLHGRVNIVPVISKADCLTRDELLRFKKQIVKDAETAEIKLYKFPELEDPYTD--K 235
Query: 602 QQDRELKEAAPFAVVASDIVLEMGGKRVRGRQYPWGIVDVENPRHSDFTKLRTMLISTHM 423
+L++A PFA++ S+++ E GK++R R+YPWG V+VEN +H+DF LR M+I T++
Sbjct: 236 VAIEKLRKALPFAIIGSNMLKEKDGKKIRYREYPWGTVEVENMQHNDFLTLRDMIIRTNL 295
Query: 422 QDLKDVTQDVHYENFRAQCISQISQ---------HAMRERGKLKRDSMGNNNDVVITDTD 270
D+ DVT++VHYENFR + + + + H ER + ++D N + T+
Sbjct: 296 IDMIDVTRNVHYENFRFRQMEGLPKNEKNRDPFTHLEEERRQKEQDLDEKRNTLEKVFTE 355
Query: 269 RLLLQKDEEIRRMQDMLTQMQQKLKASDKKHDSII 165
+ +K RM + QQ + D K II
Sbjct: 356 KTSARKKRSDERMSALEELEQQNKQKIDAKRAEII 390
>AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical
protein Y50E8A.4c protein.
Length = 465
Score = 120 bits (289), Expect = 1e-27
Identities = 58/142 (40%), Positives = 91/142 (64%), Gaps = 1/142 (0%)
Frame = -2
Query: 776 MERLHRKVNIVVVIAKADSLTAIEIKRLKARILNDLEEHQIQVYQFPECDSDEDEDFKQQ 597
+ L ++VN++ VIAK+D+ E+ R KA+IL++L+ +I +Y FP +DE
Sbjct: 227 LRELAKRVNVIPVIAKSDTTCKDELLRFKAKILSELKSQKIDIYTFPT----DDETVSTT 282
Query: 596 DRELKEAAPFAVVAS-DIVLEMGGKRVRGRQYPWGIVDVENPRHSDFTKLRTMLISTHMQ 420
++E+ ++ PFAVV S D V + G+ VR RQYPWGIV+VEN H DF KLR L+ T++
Sbjct: 283 NKEMNKSVPFAVVGSIDFVKKENGQMVRARQYPWGIVEVENESHCDFVKLREALLRTNVD 342
Query: 419 DLKDVTQDVHYENFRAQCISQI 354
+++ T + YEN+R + Q+
Sbjct: 343 EMRQRTHESLYENYRRDRLRQM 364
>AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical
protein Y50E8A.4b protein.
Length = 461
Score = 120 bits (289), Expect = 1e-27
Identities = 58/142 (40%), Positives = 91/142 (64%), Gaps = 1/142 (0%)
Frame = -2
Query: 776 MERLHRKVNIVVVIAKADSLTAIEIKRLKARILNDLEEHQIQVYQFPECDSDEDEDFKQQ 597
+ L ++VN++ VIAK+D+ E+ R KA+IL++L+ +I +Y FP +DE
Sbjct: 227 LRELAKRVNVIPVIAKSDTTCKDELLRFKAKILSELKSQKIDIYTFPT----DDETVSTT 282
Query: 596 DRELKEAAPFAVVAS-DIVLEMGGKRVRGRQYPWGIVDVENPRHSDFTKLRTMLISTHMQ 420
++E+ ++ PFAVV S D V + G+ VR RQYPWGIV+VEN H DF KLR L+ T++
Sbjct: 283 NKEMNKSVPFAVVGSIDFVKKENGQMVRARQYPWGIVEVENESHCDFVKLREALLRTNVD 342
Query: 419 DLKDVTQDVHYENFRAQCISQI 354
+++ T + YEN+R + Q+
Sbjct: 343 EMRQRTHESLYENYRRDRLRQM 364
>AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical
protein Y50E8A.4a protein.
Length = 530
Score = 120 bits (289), Expect = 1e-27
Identities = 58/142 (40%), Positives = 91/142 (64%), Gaps = 1/142 (0%)
Frame = -2
Query: 776 MERLHRKVNIVVVIAKADSLTAIEIKRLKARILNDLEEHQIQVYQFPECDSDEDEDFKQQ 597
+ L ++VN++ VIAK+D+ E+ R KA+IL++L+ +I +Y FP +DE
Sbjct: 296 LRELAKRVNVIPVIAKSDTTCKDELLRFKAKILSELKSQKIDIYTFPT----DDETVSTT 351
Query: 596 DRELKEAAPFAVVAS-DIVLEMGGKRVRGRQYPWGIVDVENPRHSDFTKLRTMLISTHMQ 420
++E+ ++ PFAVV S D V + G+ VR RQYPWGIV+VEN H DF KLR L+ T++
Sbjct: 352 NKEMNKSVPFAVVGSIDFVKKENGQMVRARQYPWGIVEVENESHCDFVKLREALLRTNVD 411
Query: 419 DLKDVTQDVHYENFRAQCISQI 354
+++ T + YEN+R + Q+
Sbjct: 412 EMRQRTHESLYENYRRDRLRQM 433
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = -2
Query: 284 ITDTDRLLLQKDEEIRRMQDMLTQMQQKLKASDKKHDSII 165
+T TD + KD+E+R ++ L +M+ + ++KK D +I
Sbjct: 846 VTRTDDEIRAKDDELRATKERLLKMEHDFRENEKKLDQVI 885
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -2
Query: 752 NIVVVIAKADSLTAIEIKRLKARILNDLEEHQIQVYQFPECDSDEDEDFKQQDRELKEAA 573
N+ ++ +KAD L I R A D +E + D +++ED +++D E +E
Sbjct: 452 NVPLIKSKADLLKQIAANRAAASAAQDSDEDE---------DEEDEEDVEEEDEEEEEEE 502
Query: 572 PFAVVASDIVLEMGG 528
V + + GG
Sbjct: 503 DIPAVKPKVTEKQGG 517
>AF078789-3|AAK68487.1| 295|Caenorhabditis elegans Hypothetical
protein Y44E3B.1b protein.
Length = 295
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = -2
Query: 326 KLKRDSMGNNNDVVITDTDR---LLLQKDEEIRRMQDMLTQMQQKLKA 192
KLKR NND V ++ L LQKDEE M+ +TQ++ +L++
Sbjct: 232 KLKR---ARNNDAVRKSRNKAKELQLQKDEEYDEMKKRITQLEAELQS 276
>AF078789-2|AAK21516.1| 318|Caenorhabditis elegans Hypothetical
protein Y44E3B.1a protein.
Length = 318
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = -2
Query: 326 KLKRDSMGNNNDVVITDTDR---LLLQKDEEIRRMQDMLTQMQQKLKA 192
KLKR NND V ++ L LQKDEE M+ +TQ++ +L++
Sbjct: 232 KLKR---ARNNDAVRKSRNKAKELQLQKDEEYDEMKKRITQLEAELQS 276
>Z75535-3|CAH04733.1| 495|Caenorhabditis elegans Hypothetical
protein F14B4.2b protein.
Length = 495
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = -2
Query: 317 RDSMGNNNDVVITDTDRLLLQKDEEIRR-MQDMLTQMQQKLKASDKK 180
++S+ +N+ +I + + L+ D+++RR MQ M M+Q L S KK
Sbjct: 23 QNSIDVSNNQMIQEACQRLVLSDQQLRRIMQSMEKSMEQGLATSTKK 69
>U97193-13|AAO38676.1| 215|Caenorhabditis elegans Hypothetical
protein C06A5.8b protein.
Length = 215
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -2
Query: 647 YQFPECDSDEDEDFKQQDRELKEAAPFAVVASDIVLEMGGKRVRGRQ 507
Y E D DE+E+ ++D E +E P A S E VRG Q
Sbjct: 126 YDEEESDEDEEENEDEEDVEEEEEKPCAEKKSPAQPERSSSLVRGFQ 172
>U97193-12|AAB52441.1| 283|Caenorhabditis elegans Hypothetical
protein C06A5.8a protein.
Length = 283
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -2
Query: 647 YQFPECDSDEDEDFKQQDRELKEAAPFAVVASDIVLEMGGKRVRGRQ 507
Y E D DE+E+ ++D E +E P A S E VRG Q
Sbjct: 194 YDEEESDEDEEENEDEEDVEEEEEKPCAEKKSPAQPERSSSLVRGFQ 240
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/85 (21%), Positives = 39/85 (45%)
Frame = -2
Query: 428 HMQDLKDVTQDVHYENFRAQCISQISQHAMRERGKLKRDSMGNNNDVVITDTDRLLLQKD 249
++ DL+++ ++ + + Q Q A ++ + M D +R L +K
Sbjct: 161 NVSDLEEIIKEYSVLKMKEEKEKQCLQMASDSWAMMREEIMEKRE--TNRDLNRQLKEKS 218
Query: 248 EEIRRMQDMLTQMQQKLKASDKKHD 174
EE+ + +L + KLKA +++ D
Sbjct: 219 EELMQKSQILVETTLKLKAVEEERD 243
>Z81050-1|CAB02850.1| 582|Caenorhabditis elegans Hypothetical
protein C50B6.2 protein.
Length = 582
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = -2
Query: 434 STHMQDLKDVTQDVHYENFRAQCISQISQHAMRERGK-LKRDSMGNNNDVVITDTDRLLL 258
S + Q KD+T+ + + S++ + K DS+ DT +L+
Sbjct: 393 SKYEQAQKDLTEAISIQTVHLPATSRVIANTTHLLAKAFSSDSLFEQAAAHFNDTKNILI 452
Query: 257 QKDEEIRR-MQDMLTQMQQKLKASDKKHDSII 165
K EE+++ ++ + + +++ K+ D II
Sbjct: 453 AKSEELKKQLETVSDDAKSDIQSEIKELDGII 484
>U97009-5|AAC69036.2| 505|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 220 protein.
Length = 505
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 101 LKPTIY*KVVDITQYLWNAIHLLYCRVFYRK 193
L P++ K+V ++W+ H Y FYRK
Sbjct: 312 LHPSLQIKLVQTIWHVWSKAHKCYSTAFYRK 342
>AF003740-1|AAM15561.2| 488|Caenorhabditis elegans Hypothetical
protein C41D11.3 protein.
Length = 488
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 636 RELVYLYLVFFKIVKYSCLESFYFDRRKRVRFCDNHHDVHFAMQTLHH 779
RE +++ + K +++S L YFDRR+ D+ M HH
Sbjct: 165 REEIFIPGIRRKKIRFSGLHVHYFDRRQGGSTVPTEGDISLDMHNKHH 212
>Z81496-6|CAB04070.2| 313|Caenorhabditis elegans Hypothetical
protein F09C6.2 protein.
Length = 313
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -2
Query: 419 DLKDVTQDVHYENFRAQCISQISQHAMRERGKLKRDSMGNNNDVV 285
D K+V+ H+ENF + ++ +Q A++ R L R S + +V
Sbjct: 194 DSKEVSHMFHFENFNIKMLNFDTQAAVKMRDDLMRRSTFKSCSIV 238
>U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical protein
R07G3.3c protein.
Length = 1316
Score = 27.9 bits (59), Expect = 8.7
Identities = 36/160 (22%), Positives = 66/160 (41%)
Frame = -2
Query: 686 RILNDLEEHQIQVYQFPECDSDEDEDFKQQDRELKEAAPFAVVASDIVLEMGGKRVRGRQ 507
++ LE++Q ++ E S DE +RE E VAS L + G R
Sbjct: 952 QLAESLEQNQKKL---DELRSKNDEQLFAHERETNELRRQLQVAS---LNLDGVRRELEV 1005
Query: 506 YPWGIVDVENPRHSDFTKLRTMLISTHMQDLKDVTQDVHYENFRAQCISQISQHAMRERG 327
++ ++N + + L +T ++ +D ++ N R Q A+
Sbjct: 1006 VNNNLISMQNEATRNSSALEQH--TTIVRQFEDRITEIESANLRLQTELNNKCAALVAES 1063
Query: 326 KLKRDSMGNNNDVVITDTDRLLLQKDEEIRRMQDMLTQMQ 207
KR++ D +I +RLL +K EE+ +++ Q Q
Sbjct: 1064 TAKREA-----DQMIEHAERLLQKKTEELNSIEEENRQKQ 1098
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
R07G3.3a protein.
Length = 1982
Score = 27.9 bits (59), Expect = 8.7
Identities = 36/160 (22%), Positives = 66/160 (41%)
Frame = -2
Query: 686 RILNDLEEHQIQVYQFPECDSDEDEDFKQQDRELKEAAPFAVVASDIVLEMGGKRVRGRQ 507
++ LE++Q ++ E S DE +RE E VAS L + G R
Sbjct: 952 QLAESLEQNQKKL---DELRSKNDEQLFAHERETNELRRQLQVAS---LNLDGVRRELEV 1005
Query: 506 YPWGIVDVENPRHSDFTKLRTMLISTHMQDLKDVTQDVHYENFRAQCISQISQHAMRERG 327
++ ++N + + L +T ++ +D ++ N R Q A+
Sbjct: 1006 VNNNLISMQNEATRNSSALEQH--TTIVRQFEDRITEIESANLRLQTELNNKCAALVAES 1063
Query: 326 KLKRDSMGNNNDVVITDTDRLLLQKDEEIRRMQDMLTQMQ 207
KR++ D +I +RLL +K EE+ +++ Q Q
Sbjct: 1064 TAKREA-----DQMIEHAERLLQKKTEELNSIEEENRQKQ 1098
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
R07G3.3b protein.
Length = 1987
Score = 27.9 bits (59), Expect = 8.7
Identities = 36/160 (22%), Positives = 66/160 (41%)
Frame = -2
Query: 686 RILNDLEEHQIQVYQFPECDSDEDEDFKQQDRELKEAAPFAVVASDIVLEMGGKRVRGRQ 507
++ LE++Q ++ E S DE +RE E VAS L + G R
Sbjct: 952 QLAESLEQNQKKL---DELRSKNDEQLFAHERETNELRRQLQVAS---LNLDGVRRELEV 1005
Query: 506 YPWGIVDVENPRHSDFTKLRTMLISTHMQDLKDVTQDVHYENFRAQCISQISQHAMRERG 327
++ ++N + + L +T ++ +D ++ N R Q A+
Sbjct: 1006 VNNNLISMQNEATRNSSALEQH--TTIVRQFEDRITEIESANLRLQTELNNKCAALVAES 1063
Query: 326 KLKRDSMGNNNDVVITDTDRLLLQKDEEIRRMQDMLTQMQ 207
KR++ D +I +RLL +K EE+ +++ Q Q
Sbjct: 1064 TAKREA-----DQMIEHAERLLQKKTEELNSIEEENRQKQ 1098
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,150,955
Number of Sequences: 27780
Number of extensions: 328199
Number of successful extensions: 1284
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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