Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m24r
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   3.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   4.2  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   4.2  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = -2

Query: 383 NFRAQCISQISQHAMRERGKLKRDSMGNNNDVVITDTDRLLLQKDEEIRRMQDMLTQMQQ 204
           NF+   I Q+ QH      K+      +  + +I ++  + +  +E IR +Q   T + +
Sbjct: 165 NFKNSNIFQLKQHMRDTMNKIAETLDEDTKNKLIEESKTVFILNNEIIRSIQGTGTIILK 224

Query: 203 K 201
           K
Sbjct: 225 K 225


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 85  YDKFTTKTYNLLKSRRYNTISLER 156
           Y+ +    YN  K   YN I++E+
Sbjct: 338 YNNYNNNNYNNYKKLYYNIINIEQ 361


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/50 (22%), Positives = 24/50 (48%)
 Frame = -2

Query: 350 QHAMRERGKLKRDSMGNNNDVVITDTDRLLLQKDEEIRRMQDMLTQMQQK 201
           QH+  E+ + + + M          +DR+  Q+ ++ ++ Q    Q QQ+
Sbjct: 58  QHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQQ 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,816
Number of Sequences: 438
Number of extensions: 4032
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)