Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m24f
         (575 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   1.9  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    22   3.3  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   4.3  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   7.5  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   9.9  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 442 LKESGKMTMERDRGERDYIGFATLPEQVHRKSVKR 546
           +K   K+TM+   GE D   F  LPE+     + R
Sbjct: 558 IKSREKLTMKFHDGEVDASYFCKLPEKFRFVKINR 592


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -3

Query: 201 WNFKFSTFLQPLLSLTYIQLKPQRKSRATSNVNYDANSKNV*LIK 67
           W F  + FL  LL   + Q+        T NV ++ + KN+ ++K
Sbjct: 243 WLFFLANFLTNLLFWEFDQIVNVAYRMETWNVVFNGSRKNLDVMK 287


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 296 DKSVFLREIINV*SDARTRRR 358
           +K +FLRE+I+  SDA  + R
Sbjct: 33  NKEIFLRELISNSSDALDKIR 53


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 343 PDETKERNKNYIEIFNSLSPKI 408
           PDE K++  +  E+F    PK+
Sbjct: 154 PDEAKKKGCSSEEVFQFECPKV 175


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 553 RNLSSLICGAPVQAM 509
           RNLSSL  G  +QA+
Sbjct: 125 RNLSSLQIGEKIQAL 139


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,261
Number of Sequences: 336
Number of extensions: 2247
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)