Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m24f
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    40   3e-04
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    37   0.002
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    29   0.49 
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c...    26   3.4  

>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 14/27 (51%), Positives = 23/27 (85%)
 Frame = +1

Query: 493 YIGFATLPEQVHRKSVKRGFDFTLMVV 573
           Y+GFA+LP Q HR+ V++GF+F ++V+
Sbjct: 75  YVGFASLPNQWHRRCVRQGFNFNVLVL 101


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +1

Query: 490 DYIGFATLPEQVHRKSVKRGFDFTLMVV 573
           +Y+GF ++  Q++RK ++RGF F +MVV
Sbjct: 11  NYVGFDSITSQINRKLIRRGFQFNVMVV 38


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 484 ERDYIGFATLPEQVHRKSVKRGFDFTLMV 570
           E +++G A LP Q H+   + G  FTLM+
Sbjct: 5   ETNFVGIADLPNQRHKIVSRNGVAFTLML 33


>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +2

Query: 47  PKFFY-CFLINYTFLELA 97
           P+FFY CFL N TFL  A
Sbjct: 171 PRFFYTCFLCNSTFLASA 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,067,381
Number of Sequences: 5004
Number of extensions: 37320
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)