Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m24f
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52502| Best HMM Match : GTP_CDC (HMM E-Value=1.9e-06)               53   1e-07
SB_36446| Best HMM Match : GTP_CDC (HMM E-Value=0)                     48   5e-06
SB_6352| Best HMM Match : GTP_CDC (HMM E-Value=1.49939e-42)            44   7e-05

>SB_52502| Best HMM Match : GTP_CDC (HMM E-Value=1.9e-06)
          Length = 101

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 22/28 (78%), Positives = 26/28 (92%)
 Frame = +1

Query: 490 DYIGFATLPEQVHRKSVKRGFDFTLMVV 573
           +Y+GFA LP QVHRKSVK+GF+FTLMVV
Sbjct: 3   NYVGFANLPNQVHRKSVKKGFEFTLMVV 30


>SB_36446| Best HMM Match : GTP_CDC (HMM E-Value=0)
          Length = 384

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 20/27 (74%), Positives = 24/27 (88%)
 Frame = +1

Query: 493 YIGFATLPEQVHRKSVKRGFDFTLMVV 573
           Y+GFA LP QV RKSVK+GF+FT+MVV
Sbjct: 4   YVGFANLPNQVFRKSVKKGFEFTVMVV 30


>SB_6352| Best HMM Match : GTP_CDC (HMM E-Value=1.49939e-42)
          Length = 275

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +1

Query: 493 YIGFATLPEQVHRKSVKRGFDFTLMVV 573
           Y+GF T+ EQ+ RKS+KRGF+F LMVV
Sbjct: 94  YVGFDTVQEQIRRKSLKRGFEFNLMVV 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,612,489
Number of Sequences: 59808
Number of extensions: 234577
Number of successful extensions: 398
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)