Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10m22r
(747 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0) 287 6e-78
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068) 56 4e-08
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 33 0.33
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31) 30 2.3
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_11| Best HMM Match : E6 (HMM E-Value=2.2) 29 4.0
SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88) 29 5.3
SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8) 29 5.3
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_46109| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
Length = 192
Score = 287 bits (704), Expect = 6e-78
Identities = 133/189 (70%), Positives = 156/189 (82%)
Frame = -1
Query: 567 PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 388
P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE TRK RII
Sbjct: 4 PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63
Query: 387 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK 208
DVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK + TE E+ I+NK
Sbjct: 64 DVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNK 123
Query: 207 KRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYL 28
KRS RK AR+ AKV +EEQF TGRL ACV+SRPGQ GR DGYILEGKELEFY+
Sbjct: 124 KRSNHCTRKLEARKANAKVAPGMEEQFVTGRLYACVSSRPGQSGRCDGYILEGKELEFYI 183
Query: 27 RKIKSKRAK 1
+K+K+++AK
Sbjct: 184 KKLKARKAK 192
>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
Length = 147
Score = 55.6 bits (128), Expect = 4e-08
Identities = 24/77 (31%), Positives = 47/77 (61%)
Frame = -1
Query: 507 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 328
P++I ++ GG+TK +ALR++ G ++ S+ + I+ V+++ +N E + +VK
Sbjct: 37 PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKG 96
Query: 327 AIVVVDATPFRQWYESH 277
+IV VD PF W++ +
Sbjct: 97 SIVQVDNKPFEDWFQEY 113
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 207 KRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 46
++S+K K + +L +EG E H G LL S C R GY ++G+
Sbjct: 133 EKSEKYTEKKIRSDKLTWIEGNEEGASHIGDLLLKYDSLVSSCSRRIGYDIQGR 186
>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2537
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 591 RATGGKRAPIRKKRKYELGRPAANTRLGP 505
R GG R P+++ +E +P+ N R GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797
>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
Length = 883
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -1
Query: 252 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGR 115
+ AKL + EE II K+ + TA + ++ K++ ALE +G+
Sbjct: 701 RAAKLQQEEEEIIRKREANNTALAAIGPRKKRKLDEALEATRPSGQ 746
>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 630 RSESISRDHWHKRRATGGKRAPIRKKRK-YELGRPAANTRLGPQRIHSV 487
+ +S+S D W K++ K+ I+KKR+ + A LG QR+ +
Sbjct: 384 KMQSLSYDEWLKQKREQDKKQAIKKKREIIDSHLDAVVAELGKQRVERI 432
>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -1
Query: 408 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 295
T++ +I D++ N N VR +TL+ NA +++D F+
Sbjct: 18 TKRKKIADILSNEIRN--VRERTLILNAALIIDICVFK 53
>SB_11| Best HMM Match : E6 (HMM E-Value=2.2)
Length = 485
Score = 29.1 bits (62), Expect = 4.0
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Frame = -1
Query: 300 FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLA---KVEGALE-- 136
F W + L + +G + E +E + N +KT + YL K++GA E
Sbjct: 174 FEAWKDIRKVLLNYKNEGTGIVEVDEGVTNN--IEKTLKLYLISPNHEIDQKLKGAPEKD 231
Query: 135 ----EQFHTGRLLACVASRPGQCGRADGYILEG 49
E FH L CV + + DGY L G
Sbjct: 232 IYFYETFHFLGGLQCVPLQENEISITDGYALMG 264
>SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)
Length = 842
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 133 AIPHRAFAGLRGESPRSVW 77
A PH A +G+R SPR +W
Sbjct: 108 ACPHHAVSGVRVSSPRGIW 126
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 133 AIPHRAFAGLRGESPRSVW 77
A PH A +G+R PRS+W
Sbjct: 139 AYPHHAVSGVRVSPPRSIW 157
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 133 AIPHRAFAGLRGESPRSVW 77
A PH A +G+R PRS+W
Sbjct: 201 ACPHHAVSGVRVSPPRSIW 219
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 133 AIPHRAFAGLRGESPRSVW 77
A PH A +G+R PRS+W
Sbjct: 232 ACPHHAVSGVRVSPPRSIW 250
>SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)
Length = 530
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +2
Query: 278 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSMIRVLRVEHS 418
CD+ HC + T+T+ + +V + + ++ ++ V R +HS
Sbjct: 448 CDNDHCSQELCLTSTVDQIQQVLNNCDKIKTQVHVEGLVEVWRKDHS 494
>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 210 KKRSQKTARKYLARQRLAKVEGALEE 133
K+R QK + Y RQR ++ +LEE
Sbjct: 15 KRRKQKATKSYAERQRRTRINKSLEE 40
>SB_46109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +2
Query: 608 SRLILS--DLKHSCFKKRFYKLLTLLRRFH*IYQIILWVNQLTHL 736
+RLI+ + K SCFK RF L LLR F + I L V + H+
Sbjct: 285 TRLIIQNQERKTSCFKHRFRSNLLLLRGFS-TFIIFLMVKRNLHV 328
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,650,833
Number of Sequences: 59808
Number of extensions: 481052
Number of successful extensions: 1241
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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