Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m22r
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   271   3e-73
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   267   6e-72
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea...    31   0.81 
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   3.3  
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    29   4.3  
At3g07950.1 68416.m00972 rhomboid protein-related contains 6 tra...    28   5.7  
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    28   7.6  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  271 bits (665), Expect = 3e-73
 Identities = 136/217 (62%), Positives = 164/217 (75%), Gaps = 11/217 (5%)
 Frame = -1

Query: 618 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLD 442
           ISRD  HKRRATGGK+   RKKRKYE+GR  ANT+L   + +  +R RGGN K+RALRLD
Sbjct: 3   ISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLD 62

Query: 441 TGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL 262
           TGN+SWGSE +TRKTR++DVVYNASNNELVRTKTLVK+AIV VDA PF+QWY SHY + L
Sbjct: 63  TGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVEL 122

Query: 261 GR-KKGAKLT-----EAEEAII----NKKRSQKTARKYLARQRLAKVEGALEEQFHTGRL 112
           GR KK A  T     E EEA +      K+S    RK  +RQ    ++  +E+QF +GRL
Sbjct: 123 GRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRL 182

Query: 111 LACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 1
           LAC++SRPGQCGRADGYILEGKELEFY++KI+ K+ K
Sbjct: 183 LACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGK 219


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  267 bits (654), Expect = 6e-72
 Identities = 132/207 (63%), Positives = 155/207 (74%), Gaps = 1/207 (0%)
 Frame = -1

Query: 618 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLD 442
           ISRD  HKRRATGGK+   RKKRKYELGR  ANT+L   + +  +R RGGN K+RALRLD
Sbjct: 3   ISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLD 62

Query: 441 TGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL 262
           TGNFSWGSE  TRKTRI+DV YNASNNELVRT+TLVK+AIV VDA PF+Q Y  HY + +
Sbjct: 63  TGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDI 122

Query: 261 GRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQ 82
           GRKK  +    EE     K+S    RK   RQ    ++  LEEQF +GRLLAC+ASRPGQ
Sbjct: 123 GRKKKGEAVTTEEV----KKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQ 178

Query: 81  CGRADGYILEGKELEFYLRKIKSKRAK 1
           CGRADGYILEGKELEFY++K++ K+ K
Sbjct: 179 CGRADGYILEGKELEFYMKKLQKKKGK 205


>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
           family protein similar to Vegetatible incompatibility
           protein HET-E-1 (SP:Q00808) {Podospora anserina};
           contains 5 WD-40 repeats (PF00400); similar to  beta
           transducin-like protein HET-E2C*4
           (GP:17225206)[Podospora anserina]
          Length = 530

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -1

Query: 255 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVAS-RPGQC 79
           KKG KLT  ++ ++ K R ++     L  ++ A V   +EE     +L+ CV++   G+ 
Sbjct: 393 KKGLKLTRHDK-LLKKFRHKEALVSVLEEKKPANVVAVMEELVARRKLMKCVSNMEEGEL 451

Query: 78  GRADGYI 58
           G   G++
Sbjct: 452 GMLLGFL 458


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 357 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 229
           L  T  L  NA   VVD      ++ES+Y LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -1

Query: 477 GGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 316
           GG T  R +R      +    C    +++ ++V++ + NELV T    +N I+V
Sbjct: 353 GGGTADRCIRFWNTTTNTHLNCVDTNSQVCNLVWSKNVNELVSTHGYSQNQIIV 406


>At3g07950.1 68416.m00972 rhomboid protein-related contains 6
           transmembrane domains; similar to phosphatidyl inositol
           glycan class T (GI:14456615) [Homo sapiens]
          Length = 304

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -1

Query: 651 FLKQLCLRSESISRDHWHKRRATGGKRAP----IRKKRKYELGRPAANTRLGPQRIHSVR 484
           F + LC RS + S DH +   +T G   P        R+ E G  A   RLG +R+   R
Sbjct: 235 FHRMLCGRSNATSEDHDY---STSGAPLPGSDSAEASRRRERGARALEERLGTERLVPAR 291

Query: 483 SR 478
           ++
Sbjct: 292 NK 293


>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +2

Query: 347 VRTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLVFPP 478
           +R+ S LD+L     +RVL V H+    +LPV   + RYL   P
Sbjct: 580 IRSFSALDSLRHLKQLRVLDVSHNHICGELPVD--TTRYLCSSP 621


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,588,820
Number of Sequences: 28952
Number of extensions: 320389
Number of successful extensions: 860
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)