Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10m22f
(616 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN full... 254 1e-66
UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93; Eukaryo... 254 1e-66
UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82; Eukaryo... 217 1e-55
UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8; Euteleostomi... 194 2e-48
UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21; Eukaryo... 190 2e-47
UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4; Eukaryot... 183 3e-45
UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19; Eukaryo... 161 1e-38
UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;... 150 2e-35
UniRef50_UPI000049933B Cluster: conserved hypothetical protein; ... 142 8e-33
UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces ... 111 1e-23
UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamb... 110 2e-23
UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitoz... 101 1e-20
UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillard... 97 4e-19
UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella... 77 3e-13
UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7; Archaea... 68 2e-10
UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5; Archaea... 66 6e-10
UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5; Euryarc... 62 8e-09
UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 57 3e-07
UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3; Euryarc... 56 5e-07
UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4; Archaea... 56 7e-07
UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1; Methano... 54 4e-06
UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3; Desulfu... 51 3e-05
UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2; Thermoprote... 50 3e-05
UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5; Methano... 50 3e-05
UniRef50_Q2NEU6 Cluster: 30S ribosomal protein S8e; n=1; Methano... 48 1e-04
UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 46 7e-04
UniRef50_A7Q5T2 Cluster: Chromosome chr14 scaffold_54, whole gen... 39 0.11
UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: ... 37 0.44
UniRef50_Q9VL72 Cluster: CG5899-PA, isoform A; n=5; Diptera|Rep:... 36 1.0
UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma j... 34 3.1
UniRef50_UPI0000F32D0C Cluster: Zinc finger CCCH domain-containi... 33 7.1
UniRef50_Q89D60 Cluster: Blr7583 protein; n=1; Bradyrhizobium ja... 33 7.1
UniRef50_A7D873 Cluster: Exodeoxyribonuclease III Xth; n=2; Meth... 33 7.1
UniRef50_A5V4W5 Cluster: TonB-dependent receptor precursor; n=1;... 33 7.1
UniRef50_A5E7M6 Cluster: Putative uncharacterized protein; n=1; ... 33 7.1
UniRef50_UPI0000DB7956 Cluster: PREDICTED: similar to Deformed C... 32 9.4
UniRef50_Q7S1X7 Cluster: Putative uncharacterized protein NCU094... 32 9.4
UniRef50_A7F1W3 Cluster: Putative uncharacterized protein; n=1; ... 32 9.4
>UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence; n=9;
Deuterostomia|Rep: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence - Mus
musculus (Mouse)
Length = 152
Score = 254 bits (622), Expect = 1e-66
Identities = 114/145 (78%), Positives = 128/145 (88%)
Frame = +1
Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 318
ISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD
Sbjct: 3 ISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDV 62
Query: 319 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG 498
GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLG
Sbjct: 63 GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLG 122
Query: 499 RKKGAKLTEAEEAIITRREVKRQQE 573
RKKGAKLT EE I+ ++ K+ Q+
Sbjct: 123 RKKGAKLTPEEEEILNKKRSKKIQK 147
>UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93;
Eukaryota|Rep: 40S ribosomal protein S8 - Homo sapiens
(Human)
Length = 208
Score = 254 bits (622), Expect = 1e-66
Identities = 114/145 (78%), Positives = 128/145 (88%)
Frame = +1
Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 318
ISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD
Sbjct: 3 ISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDV 62
Query: 319 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG 498
GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLG
Sbjct: 63 GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLG 122
Query: 499 RKKGAKLTEAEEAIITRREVKRQQE 573
RKKGAKLT EE I+ ++ K+ Q+
Sbjct: 123 RKKGAKLTPEEEEILNKKRSKKIQK 147
>UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82;
Eukaryota|Rep: 40S ribosomal protein S8 - Drosophila
melanogaster (Fruit fly)
Length = 208
Score = 217 bits (531), Expect = 1e-55
Identities = 101/144 (70%), Positives = 120/144 (83%), Gaps = 2/144 (1%)
Frame = +1
Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 318
ISRD HKRRATGGKR +RKKRK+ELGRPAANT+LG R+H VR+RGGNTK RALRL+T
Sbjct: 3 ISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLET 62
Query: 319 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG 498
GNF+W SE RKTRI DVVYNASNNELVRTKTLVKN+IVV+DATPFRQWYE+HY LPLG
Sbjct: 63 GNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLG 122
Query: 499 RKKGAKLTEAEEA--IITRREVKR 564
RK+ K + E+ ++T++ ++
Sbjct: 123 RKRNPKHAQKEDENDVLTKKRSEK 146
>UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8;
Euteleostomi|Rep: Ribosomal protein S8 - Homo sapiens
(Human)
Length = 188
Score = 194 bits (472), Expect = 2e-48
Identities = 97/145 (66%), Positives = 111/145 (76%)
Frame = +1
Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 318
ISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGG
Sbjct: 3 ISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG----------- 51
Query: 319 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG 498
C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLG
Sbjct: 52 --------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLG 102
Query: 499 RKKGAKLTEAEEAIITRREVKRQQE 573
RKKGAKLT EE I+ ++ K+ Q+
Sbjct: 103 RKKGAKLTPEEEEILNKKRSKKIQK 127
>UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21;
Eukaryota|Rep: 40S ribosomal protein S8 - Zea mays
(Maize)
Length = 221
Score = 190 bits (463), Expect = 2e-47
Identities = 96/152 (63%), Positives = 114/152 (75%), Gaps = 1/152 (0%)
Frame = +1
Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLD 315
ISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLD
Sbjct: 3 ISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLD 62
Query: 316 TGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL 495
TGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +
Sbjct: 63 TGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDI 122
Query: 496 GRKKGAKLTEAEEAIITRREVKRQQENTWQGN 591
GRKK K A++ +EV+ E T + N
Sbjct: 123 GRKK--KTPAAKKDNAEGQEVEAAAEETKKSN 152
>UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4;
Eukaryota|Rep: 40S ribosomal protein S8 - Theileria
parva
Length = 188
Score = 183 bits (446), Expect = 3e-45
Identities = 86/138 (62%), Positives = 109/138 (78%), Gaps = 1/138 (0%)
Frame = +1
Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 318
ISRD HKRR TGG+ +KKRKYELGRP++NT+LG + + VR RGGN K+RALRLD+
Sbjct: 3 ISRDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGSKLVRKVRCRGGNLKFRALRLDS 62
Query: 319 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG 498
GNFSWGS+ TRKTR++DVVYNAS+NELVRTKTLVKNAIV VD TPF+ W+++HY L LG
Sbjct: 63 GNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGLELG 122
Query: 499 R-KKGAKLTEAEEAIITR 549
+ + + +E A++ R
Sbjct: 123 KSSEDPQASEKVAALVPR 140
>UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19;
Eukaryota|Rep: 40S ribosomal protein S8 - Leishmania
major
Length = 220
Score = 161 bits (391), Expect = 1e-38
Identities = 79/133 (59%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
Frame = +1
Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 318
I R HKR+ TGGK RK+ K ELGR ANTRLG +R+ VR+RGGN K RALRLDT
Sbjct: 3 IVRSRLHKRKITGGKTKIHRKRMKAELGRLPANTRLGARRVSPVRARGGNFKIRALRLDT 62
Query: 319 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL- 495
GNF+W SE + R++DVVYNA++NELVRTKTLVKN IV VDA PF++WY HY + L
Sbjct: 63 GNFAWASEAIAHRVRLLDVVYNATSNELVRTKTLVKNCIVAVDAAPFKRWYAKHYGIDLD 122
Query: 496 GRKKGAKLTEAEE 534
KK K A E
Sbjct: 123 ADKKSTKAAVAAE 135
>UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;
Zea mays|Rep: Putative 40S ribosomal protein S8 - Zea
mays (Maize)
Length = 245
Score = 150 bits (364), Expect = 2e-35
Identities = 70/120 (58%), Positives = 92/120 (76%), Gaps = 1/120 (0%)
Frame = +1
Query: 178 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 354
G P+++++ YELGR ANT+L + + VR RGGNTK+RALR DT N+SWGSE TR
Sbjct: 113 GPFCPLQEEQGYELGRQPANTKLSSNKTVRRVRVRGGNTKWRALRFDTCNYSWGSEALTR 172
Query: 355 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 534
KTRI+DVVY A+NNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK + + ++
Sbjct: 173 KTRILDVVYIATNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKVSVAKKDD 232
>UniRef50_UPI000049933B Cluster: conserved hypothetical protein;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 237
Score = 142 bits (343), Expect = 8e-33
Identities = 66/115 (57%), Positives = 84/115 (73%)
Frame = +1
Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 318
I+RD HKRRATGGK+ ++KK+K +GR ANTRLG R+H VR R G K RALRL+
Sbjct: 3 ITRDSRHKRRATGGKKNSMQKKKKNTMGRQPANTRLGAIRVHDVRCRYGIIKRRALRLEN 62
Query: 319 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHY 483
GNFSW S+ T+ T+I++VVYNAS+N+ VRT TLVK AI+ +D PFR W+ Y
Sbjct: 63 GNFSWASQSITKGTKILNVVYNASDNDFVRTNTLVKGAIIEIDPAPFRLWFLKFY 117
>UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces
capsulatus NAm1|Rep: Ribosomal protein S8 - Ajellomyces
capsulatus NAm1
Length = 141
Score = 111 bits (267), Expect = 1e-23
Identities = 52/79 (65%), Positives = 61/79 (77%)
Frame = +1
Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 318
ISRD HKR ATG KR+ RKKR +E GR ANTR+GP+RIH VR+RGGN K+R LRL++
Sbjct: 3 ISRDSRHKRSATGAKRSHYRKKRAFEKGRQPANTRIGPKRIHLVRTRGGNQKFRGLRLES 62
Query: 319 GNFSWGSECSTRKTRIIDV 375
GNFSWGSE RK R+I V
Sbjct: 63 GNFSWGSEGIARKVRVIVV 81
>UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamblia
ATCC 50803|Rep: Ribosomal protein S8 - Giardia lamblia
ATCC 50803
Length = 174
Score = 110 bits (265), Expect = 2e-23
Identities = 57/117 (48%), Positives = 75/117 (64%), Gaps = 9/117 (7%)
Frame = +1
Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRL---------GPQRIHSVRSRGGNT 291
I+ D +KR TG + KKRKY LGR ANT+L Q+I ++R RGGN
Sbjct: 3 ITHDKMYKRSKTGAVQGKWHKKRKYNLGRQPANTKLIVKVTSKKNEGQKISTIRCRGGNI 62
Query: 292 KYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 462
K RALRL G+F+WGS + K RI+ VVYN+++NELVRT TLVK +V +D+ PF+
Sbjct: 63 KRRALRLSHGSFAWGSADISHKARILQVVYNSTSNELVRTNTLVKGCVVQIDSAPFK 119
>UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitozoon
cuniculi|Rep: Ribosomal protein S8 - Encephalitozoon
cuniculi
Length = 173
Score = 101 bits (242), Expect = 1e-20
Identities = 47/102 (46%), Positives = 68/102 (66%)
Frame = +1
Query: 157 HKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWG 336
HKRR TG K RKKR G ++T++G +++ VR RGGN KY+ALRLD G+F +
Sbjct: 9 HKRRKTGAKAVISRKKRNNRAGSQPSSTKIGERKVTPVRVRGGNRKYKALRLDMGHFKFI 68
Query: 337 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 462
+ R +++ VVY+ S+NELVRT TL K+++V + A PF+
Sbjct: 69 TTGKFRMAKLLQVVYHPSSNELVRTNTLTKSSVVKISAEPFK 110
>UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillardia
theta|Rep: 40S ribosomal protein S8 - Guillardia theta
(Cryptomonas phi)
Length = 178
Score = 96.7 bits (230), Expect = 4e-19
Identities = 49/103 (47%), Positives = 69/103 (66%)
Frame = +1
Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 318
I+R+ HKR++TGG ++ RKKR + GR +NT++G + + +R RGG K RAL L
Sbjct: 3 INREGLHKRKSTGGLKSCWRKKRNHAKGRQPSNTKIGRRCVVKLRVRGGGVKTRALFLSY 62
Query: 319 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 447
GNFS+ S T K +I+ V +N S+NELVRT TL K +IV +D
Sbjct: 63 GNFSFVSIQRTFKAKILSVAFNESSNELVRTNTLTKGSIVYLD 105
>UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella
natans|Rep: Ribosomal protein S8 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 176
Score = 77.0 bits (181), Expect = 3e-13
Identities = 37/101 (36%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Frame = +1
Query: 160 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWG 336
K++ TGGK+ I KK+ + G NT L I R RGGN K++A+ L G+F W
Sbjct: 3 KKKLTGGKKKKISKKKNHSKGNNPTNTVLRRANFIKMTRVRGGNFKFKAISLGKGSFQWK 62
Query: 337 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPF 459
+ ++ ++I+ V+YN +N +LV+ + L K I+ +D+ PF
Sbjct: 63 TMQLSKNSKILSVLYNQANLKLVQKRNLSKGTIIKIDSMPF 103
>UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7;
Archaea|Rep: 30S ribosomal protein S8e - Picrophilus
torridus
Length = 125
Score = 67.7 bits (158), Expect = 2e-10
Identities = 33/92 (35%), Positives = 52/92 (56%)
Frame = +1
Query: 163 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 342
R+ +GGK P KR+YELGR TRLG + + +RS GGN+K+ LR D N +
Sbjct: 10 RKPSGGKLRPNHSKRRYELGREPTLTRLGDRELRKIRSYGGNSKFALLRCDYANVYNPKD 69
Query: 343 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 438
+TRK +I V N+++ V+ + + ++
Sbjct: 70 KTTRKVKINTVKENSADPHYVQRNIMNRGTVI 101
>UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5;
Archaea|Rep: 30S ribosomal protein S8e - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 125
Score = 66.1 bits (154), Expect = 6e-10
Identities = 36/92 (39%), Positives = 54/92 (58%)
Frame = +1
Query: 163 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 342
R+ +GG+ + K++ E+GR A T +G +R VR+ GGN K RALRL+ S +
Sbjct: 9 RKPSGGRYHTSQGKKRTEIGRAPAETHIGEERRRIVRTFGGNQKVRALRLEYATVSNPAT 68
Query: 343 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 438
T+KT+I V N+++ VR K L K AI+
Sbjct: 69 GETKKTKIEAVEANSADPNYVRRKLLTKGAII 100
>UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Thermoplasma acidophilum
Length = 127
Score = 62.5 bits (145), Expect = 8e-09
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Frame = +1
Query: 163 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSV-RSRGGNTKYRALRLDTGNFSWGS 339
++ATGG RKKR++ELGR T+LG + V R+ GGNTK +T N S
Sbjct: 10 KKATGGSLKQSRKKRRFELGREPTLTKLGTKTERKVIRTMGGNTKVILFTAETANVYDAS 69
Query: 340 ECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 447
E +K +II V N +N+ V+ + K ++ +
Sbjct: 70 EKKIKKAKIITVKANPANSHYVQRNIINKGTVIATE 105
>UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrococcus
horikoshii
Length = 127
Score = 57.2 bits (132), Expect = 3e-07
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +1
Query: 163 RRATGGKRAPIRKKRKYELGRPAANTRLGPQ-RIHSVRSRGGNTKYRALRLDTGNFSWGS 339
++ +GG+ RKKRK ELGR +NTR+ Q + +R+ GGN K R N +
Sbjct: 10 KKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAYANV-FDK 68
Query: 340 ECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 438
RK RII V+ N +N + R + K AI+
Sbjct: 69 SGKGRKVRIIRVLENPANRQFARRNIITKGAII 101
>UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Uncultured methanogenic archaeon RC-I
Length = 125
Score = 56.4 bits (130), Expect = 5e-07
Identities = 31/95 (32%), Positives = 46/95 (48%)
Frame = +1
Query: 163 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 342
R+ATGG+ R KRK+ELGR +G Q++ + G +K R L+ D N +
Sbjct: 9 RKATGGRLRLNRSKRKFELGRDFTIPVIGAQKLKVLNVTGNGSKVRVLKSDVVNVTDPKT 68
Query: 343 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 447
T+K ++ V N +N VR L K V +
Sbjct: 69 GKTQKVKMTTVTENPANKNYVRRNFLTKGTFVTTE 103
>UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4;
Archaea|Rep: 30S ribosomal protein S8e - Sulfolobus
solfataricus
Length = 133
Score = 56.0 bits (129), Expect = 7e-07
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +1
Query: 163 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIH-SVRSRGGNTKYRALRLDTGNFSWGS 339
R+ TGG + R KRKYE+G P T L + I R+ GGN K R T N +
Sbjct: 10 RKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVLDPA 69
Query: 340 ECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 450
+ +K +I++++ +N EL R +++ A + +A
Sbjct: 70 TNTAKKVKILEILETPANKELARRGIIIRGAKIRTEA 106
>UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S8e -
Methanopyrus kandleri
Length = 133
Score = 53.6 bits (123), Expect = 4e-06
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Frame = +1
Query: 154 WHKR---RATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDT- 318
WH R + TGG+ P RKKRK+E+G P T +G +R + R GGN K + L+ T
Sbjct: 4 WHGRSLRKPTGGRIRPHRKKRKFEMGNPPTETLVGEERKLKERRGMGGNVK-KGLKFATH 62
Query: 319 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 438
N + + RI +VV N ++ R + K AI+
Sbjct: 63 ANVADPETGEVKCVRIEEVVKNPASQYYERHGVITKGAII 102
>UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3;
Desulfurococcales|Rep: 30S ribosomal protein S8e -
Aeropyrum pernix
Length = 136
Score = 50.8 bits (116), Expect = 3e-05
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Frame = +1
Query: 160 KRRATGGKRAPIRK-KRKYELGRPAANTRLG---PQRIHSVRSRGGNTKYRALRLDTGNF 327
K++ +GGKR K KRKY GRP T L + VR+RGG+ K +A ++
Sbjct: 9 KKKPSGGKRRYYYKVKRKYAAGRPPTYTTLSAAEEEERKPVRARGGSYKIKAKKVAFAVV 68
Query: 328 SWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 438
S RK RI+ +V ++ E R +VK A++
Sbjct: 69 SNPKTGEARKARILRIVETPAHREYARRGIIVKGAVI 105
>UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2;
Thermoprotei|Rep: Ribosomal protein S8E - Cenarchaeum
symbiosum
Length = 129
Score = 50.4 bits (115), Expect = 3e-05
Identities = 27/91 (29%), Positives = 47/91 (51%)
Frame = +1
Query: 166 RATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSEC 345
+ TGG+R P+R +RKYE+ R G Q + + RG TK +D N +
Sbjct: 12 KLTGGRRHPLRTRRKYEIDRYPNEALSGAQETVTRKVRGKRTKTALKTIDFVNLA-VQGA 70
Query: 346 STRKTRIIDVVYNASNNELVRTKTLVKNAIV 438
+K++I+ V+ N +NN+ R + + A++
Sbjct: 71 KVKKSKIVKVLENPTNNDYRRRGVITRGAVL 101
>UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5;
Methanococcus|Rep: 30S ribosomal protein S8e -
Methanococcus maripaludis
Length = 128
Score = 50.4 bits (115), Expect = 3e-05
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = +1
Query: 160 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQ-RIHSVRSRGGNTKYRALRLDTGNFSWG 336
+R +TG K KK K E+GRPAA T++ + + VR RG N K + + + N
Sbjct: 9 RRLSTGAKVWRAAKKHKREMGRPAAETQVSDKIKRKIVRCRGANLKVKLEKTNYANVFDQ 68
Query: 337 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 438
+ +K + +V+ N +N +R + K AI+
Sbjct: 69 ANKVCKKVVVTNVIDNKANKHYIRRNVMTKGAII 102
>UniRef50_Q2NEU6 Cluster: 30S ribosomal protein S8e; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: 30S ribosomal
protein S8e - Methanosphaera stadtmanae (strain DSM
3091)
Length = 126
Score = 48.4 bits (110), Expect = 1e-04
Identities = 28/92 (30%), Positives = 45/92 (48%)
Frame = +1
Query: 163 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 342
R+ +G + + KR E GR A TR+G + + +RG TK RA N +
Sbjct: 10 RKPSGARSRRNKNKRNAEFGRNPAETRIGDEVKKEIVARGNCTKTRATVAKRINVIDPKD 69
Query: 343 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 438
S++ ++ V+ N +N+ VR + K AIV
Sbjct: 70 NSSKNVEMLTVLENGANSHFVRRNIITKGAIV 101
>UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrobaculum
aerophilum
Length = 131
Score = 46.0 bits (104), Expect = 7e-04
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = +1
Query: 163 RRATGGKRAPIRKKRKYEL-GRPAANTRLGPQRIHSV-RSRGGNTKYRALRLDTGNFSWG 336
++ +GGK+ +RK +K L G P +LG V R RGGN K R N
Sbjct: 13 KKPSGGKKRKVRKTKKKALGGGPPQIPKLGENDTRIVERVRGGNLKVRLREAKFANVYIP 72
Query: 337 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 438
E + K +II ++ +N + R +VK +++
Sbjct: 73 KERKSVKAKIISIISTPANPDFARRNFIVKGSVI 106
>UniRef50_A7Q5T2 Cluster: Chromosome chr14 scaffold_54, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_54, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 110
Score = 38.7 bits (86), Expect = 0.11
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Frame = +1
Query: 397 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT----EAEEAIITRREVKR 564
ELVRT+TLVKNAI+ Q Y HY L +G KK A T E + + R+ KR
Sbjct: 31 ELVRTQTLVKNAII--------QRYLQHYGLDIGCKKKASTTPRKKERKGNHVVRKLEKR 82
Query: 565 QQEN 576
QQ++
Sbjct: 83 QQDH 86
>UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: TPR
repeat - Magnetospirillum magneticum (strain AMB-1 /
ATCC 700264)
Length = 556
Score = 36.7 bits (81), Expect = 0.44
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +1
Query: 169 ATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSR 279
A G +RAP K YE R AA TRL P + ++R R
Sbjct: 268 ALGAERAPANLKANYEKERDAAGTRLSPAELEALRGR 304
>UniRef50_Q9VL72 Cluster: CG5899-PA, isoform A; n=5; Diptera|Rep:
CG5899-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 844
Score = 35.5 bits (78), Expect = 1.0
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +1
Query: 337 SECSTRKT----RIIDVVYNASNNELVRTKTLV-KNAIVVVDATPFRQWYESHYTLPLGR 501
SE ST+ T ++ + AS EL KTL K A+ ++D PF W + L R
Sbjct: 174 SEMSTKMTGQRKKVFQFMNEASLIELQSVKTLSEKKALAIIDVRPFSDWSDLRQKLESIR 233
Query: 502 KKGAKLTEAEEAI 540
G L A+E I
Sbjct: 234 MSGDLLNYAQELI 246
>UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC03085 protein - Schistosoma
japonicum (Blood fluke)
Length = 120
Score = 33.9 bits (74), Expect = 3.1
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 424 KNAIVVVDATPFRQWYESHYTLPLGRKK 507
K+AIV + PFRQW+E+ Y LG K
Sbjct: 1 KSAIVQIGGAPFRQWFEAPYLKELGPPK 28
>UniRef50_UPI0000F32D0C Cluster: Zinc finger CCCH domain-containing
protein 6.; n=1; Bos taurus|Rep: Zinc finger CCCH
domain-containing protein 6. - Bos Taurus
Length = 770
Score = 32.7 bits (71), Expect = 7.1
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = +2
Query: 146 GITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSALS 256
G S GP G + PYA + S S G+PL TPGS LS
Sbjct: 595 GAVPSSSGP--GALPPYAPKLSSSTGLPLGTPGSVLS 629
>UniRef50_Q89D60 Cluster: Blr7583 protein; n=1; Bradyrhizobium
japonicum|Rep: Blr7583 protein - Bradyrhizobium
japonicum
Length = 261
Score = 32.7 bits (71), Expect = 7.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 433 IVVVDATPFRQWYESHYTLPLGRKK 507
++ +D PFR+W + TLPLG K
Sbjct: 22 VIAIDGDPFREWQRTSRTLPLGEVK 46
>UniRef50_A7D873 Cluster: Exodeoxyribonuclease III Xth; n=2;
Methylobacterium extorquens PA1|Rep:
Exodeoxyribonuclease III Xth - Methylobacterium
extorquens PA1
Length = 344
Score = 32.7 bits (71), Expect = 7.1
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 166 RATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL-DTGNFSWGSE 342
R G+R P+R++ + E RP A+ R P H+ R+R G R L + + F + S
Sbjct: 7 RGLAGRRGPLRRRGRRERLRPLADDR-RPALRHAARARPGGGGGRGLTVCEARRFRYRSG 65
Query: 343 CSTRKTRIIDV 375
S ++ I V
Sbjct: 66 SSRHASQAIPV 76
>UniRef50_A5V4W5 Cluster: TonB-dependent receptor precursor; n=1;
Sphingomonas wittichii RW1|Rep: TonB-dependent receptor
precursor - Sphingomonas wittichii RW1
Length = 803
Score = 32.7 bits (71), Expect = 7.1
Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Frame = +2
Query: 146 GITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSALSESTPFVHVVEILSTVR-CVWTPV 322
GI + GN Y G P GS L P + + STV+ WTP+
Sbjct: 488 GIRWTEDKKTFGNANQYVVEAGFLTGAPFNPDGSGLQNGDPLMGPLGQRSTVKDTAWTPM 547
Query: 323 TSLGDR 340
SL R
Sbjct: 548 ASLSYR 553
>UniRef50_A5E7M6 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 620
Score = 32.7 bits (71), Expect = 7.1
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +1
Query: 448 ATPFRQWYESHYTLPLGRKKGAKLTEAE 531
ATPF Q + +HY L RKKG K+ E E
Sbjct: 374 ATPFYQTFLAHYIWQLKRKKGKKMKEDE 401
>UniRef50_UPI0000DB7956 Cluster: PREDICTED: similar to Deformed
CG2189-PA; n=1; Apis mellifera|Rep: PREDICTED: similar
to Deformed CG2189-PA - Apis mellifera
Length = 284
Score = 32.3 bits (70), Expect = 9.4
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 149 ITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSALSESTPFVHVVEILS 295
+TG+ EGPP G + GS+S P +P + L S P +H I S
Sbjct: 230 VTGMMEGPPGGGPLGHIASGSISPLAPATSPSATLQVSAP-IHPPPIKS 277
>UniRef50_Q7S1X7 Cluster: Putative uncharacterized protein
NCU09438.1; n=6; Pezizomycotina|Rep: Putative
uncharacterized protein NCU09438.1 - Neurospora crassa
Length = 1444
Score = 32.3 bits (70), Expect = 9.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 469 YESHYTLPLGRKKGAKLTEAEEAIITRREVKRQQENTWQGNVLL 600
Y+ H L K +L EAE + +K +++ WQG V L
Sbjct: 37 YQGHILLAFALDKKGRLEEAENTYLAATRLKPEEKEAWQGLVKL 80
>UniRef50_A7F1W3 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 622
Score = 32.3 bits (70), Expect = 9.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 401 NSLLDALYTTSMIRVLRVEHSDPQEKLPVS 312
N L D +Y T I +R EH DP++ LP S
Sbjct: 309 NLLFDTIYATPPIARVRSEHEDPRDNLPDS 338
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 583,482,626
Number of Sequences: 1657284
Number of extensions: 11906863
Number of successful extensions: 31894
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 30907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31875
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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