Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10m22f
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 182 4e-47
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 182 4e-47
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 31 0.17
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 28 1.2
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 28 1.2
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 27 2.2
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 3.8
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 5.0
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 6.6
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 182 bits (443), Expect = 4e-47
Identities = 86/128 (67%), Positives = 101/128 (78%)
Frame = +1
Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 318
I+RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRLD+
Sbjct: 3 ITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDS 62
Query: 319 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG 498
GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G
Sbjct: 63 GNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG 122
Query: 499 RKKGAKLT 522
KG K T
Sbjct: 123 -SKGKKAT 129
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 182 bits (443), Expect = 4e-47
Identities = 86/128 (67%), Positives = 101/128 (78%)
Frame = +1
Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 318
I+RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRLD+
Sbjct: 3 ITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDS 62
Query: 319 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG 498
GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G
Sbjct: 63 GNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG 122
Query: 499 RKKGAKLT 522
KG K T
Sbjct: 123 -SKGKKAT 129
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 30.7 bits (66), Expect = 0.17
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Frame = +1
Query: 79 NSVNNL*KRFLKQLCLRSESISRDHWHKRRATGGKRAPIRKKRKY--ELGRPAANTRLGP 252
N + + K + + ES RD +K + G K+ + EL +N +
Sbjct: 1061 NELASFVKEEVMHRIIELESNRRDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRW 1120
Query: 253 QRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 366
Q+ + S T YRA+ LDTG+ E + K RI
Sbjct: 1121 QQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALHKPRI 1158
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 27.9 bits (59), Expect = 1.2
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +1
Query: 226 PAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 405
P NT + PQ RSR T R+L +G S S ++ +TR V +AS+N L+
Sbjct: 530 PLQNTVISPQPTR--RSR---TPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLI 581
Query: 406 RTKTLVKNAIVVVDATPFRQWYE 474
+ ++ V TPF +E
Sbjct: 582 SIISSKPSSSTVQRQTPFHSPFE 604
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 148 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 309
+ W K T K+ +KRK L R A RL + + S+ S+GG +A +
Sbjct: 32 EKWSKGVKTN-KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 27.1 bits (57), Expect = 2.2
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Frame = +1
Query: 148 DHWHKRRATGGKRAPIRKKRKY-----ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 312
D W +A G +PIR+ ++Y + +PA R H R K R + +
Sbjct: 758 DEWKASKAFGANDSPIRENKRYKHNKLQTPKPADKFR---DNYHKQNKRNREAKERGIGI 814
Query: 313 DTGNFSWGSECSTRKTRIIDVVYNASNN 396
N S RK R + A NN
Sbjct: 815 KV-NSELKSAVEIRKARELKEKRLAKNN 841
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 331 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 504
WGS+ +K + +V+ +++ + +T L AT F + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309
Query: 505 K 507
+
Sbjct: 310 Q 310
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 470 YHCLNGVASTTTIAFLTRVFVRTNS 396
++C N V S T + + VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 392 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 306
L+ + T S +V R H DP KLP RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,391
Number of Sequences: 5004
Number of extensions: 48885
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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