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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m22f
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607...   188   2e-48
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365...   188   2e-48
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352...    33   0.24 
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130...    32   0.42 
01_02_0013 + 10162478-10163581                                         30   1.3  
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861     29   2.2  
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157...    29   3.9  
01_01_1134 + 8994315-8995892                                           29   3.9  
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422...    28   5.1  
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885...    28   6.8  
12_02_0262 - 16545875-16546487,16549570-16550216                       28   6.8  
06_02_0131 + 12161268-12161781,12162123-12162867,12162950-121629...    28   6.8  
12_02_1155 + 26541137-26541142,26541244-26542623,26542730-265428...    27   8.9  
04_03_0549 - 17043135-17043351,17043641-17043846                       27   8.9  

>04_03_0510 -
           16659486-16659564,16659772-16659947,16660464-16660797,
           16661564-16661636,16661780-16661783
          Length = 221

 Score =  188 bits (459), Expect = 2e-48
 Identities = 91/134 (67%), Positives = 106/134 (79%), Gaps = 1/134 (0%)
 Frame = +1

Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLD 315
           ISRD  HKRRATGGK+   RKKRKYELGR  ANT+L   + +  VR RGGN K+RALRLD
Sbjct: 3   ISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLD 62

Query: 316 TGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL 495
           TGN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +
Sbjct: 63  TGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDI 122

Query: 496 GRKKGAKLTEAEEA 537
           GRKK A   + + A
Sbjct: 123 GRKKKAPAAKKDAA 136


>02_03_0270 +
           17135464-17135467,17135583-17135655,17136253-17136583,
           17136916-17136969,17137219-17137394,17137607-17137685
          Length = 238

 Score =  188 bits (459), Expect = 2e-48
 Identities = 93/137 (67%), Positives = 108/137 (78%), Gaps = 3/137 (2%)
 Frame = +1

Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLD 315
           ISRD  HKRRATGGK+   RKKRKYELGR  ANT+L   + +  VR RGGN K+RALRLD
Sbjct: 3   ISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLD 62

Query: 316 TGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL 495
           TGN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +
Sbjct: 63  TGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDI 122

Query: 496 GRKKGAKLT--EAEEAI 540
           GRKK A     +AE A+
Sbjct: 123 GRKKKAPAAKKDAEHAL 139


>07_01_0467 -
           3524598-3524837,3524939-3525466,3526242-3526892,
           3527015-3527500,3527580-3527792,3527885-3528174,
           3528276-3528418,3528633-3528855,3528983-3529160,
           3529598-3529867
          Length = 1073

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
 Frame = +1

Query: 205 RKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 339
           R+ +LG P+ +T+  P+R+ S+++R        K+ A   DTG  F+WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320


>03_01_0161 +
           1307206-1307769,1307979-1308101,1308182-1308286,
           1308688-1308867,1308988-1309050,1309151-1309345,
           1309704-1309805,1309885-1309947,1310045-1310113,
           1310215-1310270,1310587-1310755
          Length = 562

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +1

Query: 259 IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 438
           +H + + GG T  R +R      +    C    +++ ++V++ + NELV T    +N I+
Sbjct: 376 LHGLLASGGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQII 435

Query: 439 V 441
           V
Sbjct: 436 V 436


>01_02_0013 + 10162478-10163581
          Length = 367

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +2

Query: 239 PGSALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRP 418
           PGS +     F    E +S  RC   P+   G R  + A   SL + ++HL   +C  RP
Sbjct: 226 PGSTVYSGIGFGSP-EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARP 282

Query: 419 L 421
           L
Sbjct: 283 L 283


>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
          Length = 158

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +1

Query: 160 KRRATGGKRAPIRKKRKYELGRPAA---NTRLGPQRIHSVRSRGGNTKYRALR 309
           KRR  GG+RA  R+K + E GR  A     R G  R    R RGG  + R  R
Sbjct: 81  KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGR--RKRRRGGRRRRRRRR 131



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 160 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 294
           KRR  GG+RA  R+K + E GR  A            R RGG  +
Sbjct: 45  KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89



 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 160 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 294
           +RR  GG+RA  R+K + E GR  A            R RGG  +
Sbjct: 9   RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53


>04_03_0867 -
           20414999-20415160,20415255-20415384,20415515-20415702,
           20415967-20416001,20416363-20416579,20416737-20416820,
           20417609-20417875,20417954-20418061,20418163-20418249,
           20418629-20419399
          Length = 682

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +2

Query: 242 GSALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMN 400
           G  +    P + VV   + + C+W  + SLG R  Q++K   + L ++ + +N
Sbjct: 270 GHQMVTINPLLSVVAA-TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321


>01_01_1134 + 8994315-8995892
          Length = 525

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 319 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 462
           G FS    C+ RK   +DV     +    RT    +N+ VV D+T F+
Sbjct: 146 GLFSRDCPCAGRKAVTVDVASEPRSPATPRTHARFENSHVVADSTIFK 193


>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
            11242381-11242449,11242551-11243480,11243868-11243906,
            11244414-11244478,11244663-11244768,11244850-11245050,
            11247001-11247201,11247756-11247779,11249425-11249586,
            11249676-11249915,11250267-11250479,11250618-11250968,
            11251041-11251193,11251649-11251858,11252049-11252267,
            11252365-11252482,11252879-11253828,11254023-11254220,
            11254294-11254553,11255316-11255505,11255817-11256169,
            11258278-11258386,11258466-11258615,11258748-11258844,
            11259315-11259415
          Length = 2065

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = +1

Query: 313  DTGN-FSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD-ATPF 459
            DT N FS+GS+ ++ +  + + ++  S+ ++  +  +V NA +VV  A+PF
Sbjct: 1340 DTNNCFSYGSQRASTERTLGNDMHPGSSIQITESARIVNNANIVVQVASPF 1390


>12_02_0398 -
           18586985-18587480,18587669-18587687,18588317-18588544,
           18589699-18589966
          Length = 336

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 145 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS 267
           R   H    T G+  P  +   Y LG P A   +GP  +H+
Sbjct: 210 RPETHTFHLTVGEMVPTLQDVSYLLGLPIAGAAVGPTMVHA 250


>12_02_0262 - 16545875-16546487,16549570-16550216
          Length = 419

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +1

Query: 124 LRSESISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRA 303
           LR+E  SR+   +  A    R  + ++ + E    +     GP R H+  S+G +     
Sbjct: 307 LRAEIESREKAGREAAEAKMRMAMAEQARAEAQAHSEMIGHGPLRAHAAASQGEDGPSHE 366

Query: 304 LRLDTGNFSWGS 339
           +  + G   WG+
Sbjct: 367 MMQEQGEDGWGN 378


>06_02_0131 +
           12161268-12161781,12162123-12162867,12162950-12162986,
           12163083-12163216,12163298-12163625
          Length = 585

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = -3

Query: 458 NGVASTTTIAFLTRVFVRTNS---LLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLV 288
           +G+ ST ++ FL    + T +   +L+ +YT ++      EH DP +   +   ++RYL+
Sbjct: 392 SGLQSTQSLPFLEEHDMSTEAFEKVLEYMYTDNL------EHMDPNQAEELFDIASRYLL 445

Query: 287 FP 282
           FP
Sbjct: 446 FP 447


>12_02_1155 +
           26541137-26541142,26541244-26542623,26542730-26542852,
           26542996-26543168,26543332-26543572,26543931-26544023,
           26544092-26544232,26544358-26544450,26544633-26544837,
           26544993-26545078,26545532-26545620,26545736-26545820,
           26545898-26545954,26546319-26546399,26547130-26547321
          Length = 1014

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 493 LGRKKGAKLTEAEEAIITRREVKRQQ 570
           LGRK  + LTE +E +I RR ++ +Q
Sbjct: 222 LGRKSTSSLTELKERLIRRRMLEHKQ 247


>04_03_0549 - 17043135-17043351,17043641-17043846
          Length = 140

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 483 IMRLIPLPEWSCIYYNNCILDKGL 412
           ++ L+ +P+WS +YY N  +DK L
Sbjct: 72  LILLLLVPKWSIVYYLNSKIDKKL 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,777,994
Number of Sequences: 37544
Number of extensions: 334529
Number of successful extensions: 977
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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