BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10m22f (616 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 188 2e-48 02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 188 2e-48 07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 33 0.24 03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 32 0.42 01_02_0013 + 10162478-10163581 30 1.3 11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 2.2 04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 29 3.9 01_01_1134 + 8994315-8995892 29 3.9 12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 28 5.1 12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 6.8 12_02_0262 - 16545875-16546487,16549570-16550216 28 6.8 06_02_0131 + 12161268-12161781,12162123-12162867,12162950-121629... 28 6.8 12_02_1155 + 26541137-26541142,26541244-26542623,26542730-265428... 27 8.9 04_03_0549 - 17043135-17043351,17043641-17043846 27 8.9 >04_03_0510 - 16659486-16659564,16659772-16659947,16660464-16660797, 16661564-16661636,16661780-16661783 Length = 221 Score = 188 bits (459), Expect = 2e-48 Identities = 91/134 (67%), Positives = 106/134 (79%), Gaps = 1/134 (0%) Frame = +1 Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLD 315 ISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLD Sbjct: 3 ISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLD 62 Query: 316 TGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL 495 TGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + + Sbjct: 63 TGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDI 122 Query: 496 GRKKGAKLTEAEEA 537 GRKK A + + A Sbjct: 123 GRKKKAPAAKKDAA 136 >02_03_0270 + 17135464-17135467,17135583-17135655,17136253-17136583, 17136916-17136969,17137219-17137394,17137607-17137685 Length = 238 Score = 188 bits (459), Expect = 2e-48 Identities = 93/137 (67%), Positives = 108/137 (78%), Gaps = 3/137 (2%) Frame = +1 Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLD 315 ISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLD Sbjct: 3 ISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLD 62 Query: 316 TGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL 495 TGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + + Sbjct: 63 TGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDI 122 Query: 496 GRKKGAKLT--EAEEAI 540 GRKK A +AE A+ Sbjct: 123 GRKKKAPAAKKDAEHAL 139 >07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892, 3527015-3527500,3527580-3527792,3527885-3528174, 3528276-3528418,3528633-3528855,3528983-3529160, 3529598-3529867 Length = 1073 Score = 32.7 bits (71), Expect = 0.24 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%) Frame = +1 Query: 205 RKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 339 R+ +LG P+ +T+ P+R+ S+++R K+ A DTG F+WGS Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320 >03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286, 1308688-1308867,1308988-1309050,1309151-1309345, 1309704-1309805,1309885-1309947,1310045-1310113, 1310215-1310270,1310587-1310755 Length = 562 Score = 31.9 bits (69), Expect = 0.42 Identities = 16/61 (26%), Positives = 31/61 (50%) Frame = +1 Query: 259 IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 438 +H + + GG T R +R + C +++ ++V++ + NELV T +N I+ Sbjct: 376 LHGLLASGGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQII 435 Query: 439 V 441 V Sbjct: 436 V 436 >01_02_0013 + 10162478-10163581 Length = 367 Score = 30.3 bits (65), Expect = 1.3 Identities = 20/61 (32%), Positives = 28/61 (45%) Frame = +2 Query: 239 PGSALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRP 418 PGS + F E +S RC P+ G R + A SL + ++HL +C RP Sbjct: 226 PGSTVYSGIGFGSP-EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARP 282 Query: 419 L 421 L Sbjct: 283 L 283 >11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 Length = 158 Score = 29.5 bits (63), Expect = 2.2 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%) Frame = +1 Query: 160 KRRATGGKRAPIRKKRKYELGRPAA---NTRLGPQRIHSVRSRGGNTKYRALR 309 KRR GG+RA R+K + E GR A R G R R RGG + R R Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGR--RKRRRGGRRRRRRRR 131 Score = 29.1 bits (62), Expect = 2.9 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = +1 Query: 160 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 294 KRR GG+RA R+K + E GR A R RGG + Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89 Score = 27.9 bits (59), Expect = 6.8 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = +1 Query: 160 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 294 +RR GG+RA R+K + E GR A R RGG + Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53 >04_03_0867 - 20414999-20415160,20415255-20415384,20415515-20415702, 20415967-20416001,20416363-20416579,20416737-20416820, 20417609-20417875,20417954-20418061,20418163-20418249, 20418629-20419399 Length = 682 Score = 28.7 bits (61), Expect = 3.9 Identities = 14/53 (26%), Positives = 27/53 (50%) Frame = +2 Query: 242 GSALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMN 400 G + P + VV + + C+W + SLG R Q++K + L ++ + +N Sbjct: 270 GHQMVTINPLLSVVAA-TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321 >01_01_1134 + 8994315-8995892 Length = 525 Score = 28.7 bits (61), Expect = 3.9 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +1 Query: 319 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 462 G FS C+ RK +DV + RT +N+ VV D+T F+ Sbjct: 146 GLFSRDCPCAGRKAVTVDVASEPRSPATPRTHARFENSHVVADSTIFK 193 >12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269, 11242381-11242449,11242551-11243480,11243868-11243906, 11244414-11244478,11244663-11244768,11244850-11245050, 11247001-11247201,11247756-11247779,11249425-11249586, 11249676-11249915,11250267-11250479,11250618-11250968, 11251041-11251193,11251649-11251858,11252049-11252267, 11252365-11252482,11252879-11253828,11254023-11254220, 11254294-11254553,11255316-11255505,11255817-11256169, 11258278-11258386,11258466-11258615,11258748-11258844, 11259315-11259415 Length = 2065 Score = 28.3 bits (60), Expect = 5.1 Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 2/51 (3%) Frame = +1 Query: 313 DTGN-FSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD-ATPF 459 DT N FS+GS+ ++ + + + ++ S+ ++ + +V NA +VV A+PF Sbjct: 1340 DTNNCFSYGSQRASTERTLGNDMHPGSSIQITESARIVNNANIVVQVASPF 1390 >12_02_0398 - 18586985-18587480,18587669-18587687,18588317-18588544, 18589699-18589966 Length = 336 Score = 27.9 bits (59), Expect = 6.8 Identities = 13/41 (31%), Positives = 18/41 (43%) Frame = +1 Query: 145 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS 267 R H T G+ P + Y LG P A +GP +H+ Sbjct: 210 RPETHTFHLTVGEMVPTLQDVSYLLGLPIAGAAVGPTMVHA 250 >12_02_0262 - 16545875-16546487,16549570-16550216 Length = 419 Score = 27.9 bits (59), Expect = 6.8 Identities = 17/72 (23%), Positives = 31/72 (43%) Frame = +1 Query: 124 LRSESISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRA 303 LR+E SR+ + A R + ++ + E + GP R H+ S+G + Sbjct: 307 LRAEIESREKAGREAAEAKMRMAMAEQARAEAQAHSEMIGHGPLRAHAAASQGEDGPSHE 366 Query: 304 LRLDTGNFSWGS 339 + + G WG+ Sbjct: 367 MMQEQGEDGWGN 378 >06_02_0131 + 12161268-12161781,12162123-12162867,12162950-12162986, 12163083-12163216,12163298-12163625 Length = 585 Score = 27.9 bits (59), Expect = 6.8 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%) Frame = -3 Query: 458 NGVASTTTIAFLTRVFVRTNS---LLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLV 288 +G+ ST ++ FL + T + +L+ +YT ++ EH DP + + ++RYL+ Sbjct: 392 SGLQSTQSLPFLEEHDMSTEAFEKVLEYMYTDNL------EHMDPNQAEELFDIASRYLL 445 Query: 287 FP 282 FP Sbjct: 446 FP 447 >12_02_1155 + 26541137-26541142,26541244-26542623,26542730-26542852, 26542996-26543168,26543332-26543572,26543931-26544023, 26544092-26544232,26544358-26544450,26544633-26544837, 26544993-26545078,26545532-26545620,26545736-26545820, 26545898-26545954,26546319-26546399,26547130-26547321 Length = 1014 Score = 27.5 bits (58), Expect = 8.9 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +1 Query: 493 LGRKKGAKLTEAEEAIITRREVKRQQ 570 LGRK + LTE +E +I RR ++ +Q Sbjct: 222 LGRKSTSSLTELKERLIRRRMLEHKQ 247 >04_03_0549 - 17043135-17043351,17043641-17043846 Length = 140 Score = 27.5 bits (58), Expect = 8.9 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = -2 Query: 483 IMRLIPLPEWSCIYYNNCILDKGL 412 ++ L+ +P+WS +YY N +DK L Sbjct: 72 LILLLLVPKWSIVYYLNSKIDKKL 95 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,777,994 Number of Sequences: 37544 Number of extensions: 334529 Number of successful extensions: 977 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 948 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 975 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1478421500 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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