Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10m22f
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 188 2e-48
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 188 2e-48
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 33 0.24
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 32 0.42
01_02_0013 + 10162478-10163581 30 1.3
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 2.2
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 29 3.9
01_01_1134 + 8994315-8995892 29 3.9
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 28 5.1
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 6.8
12_02_0262 - 16545875-16546487,16549570-16550216 28 6.8
06_02_0131 + 12161268-12161781,12162123-12162867,12162950-121629... 28 6.8
12_02_1155 + 26541137-26541142,26541244-26542623,26542730-265428... 27 8.9
04_03_0549 - 17043135-17043351,17043641-17043846 27 8.9
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 188 bits (459), Expect = 2e-48
Identities = 91/134 (67%), Positives = 106/134 (79%), Gaps = 1/134 (0%)
Frame = +1
Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLD 315
ISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLD
Sbjct: 3 ISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLD 62
Query: 316 TGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL 495
TGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +
Sbjct: 63 TGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDI 122
Query: 496 GRKKGAKLTEAEEA 537
GRKK A + + A
Sbjct: 123 GRKKKAPAAKKDAA 136
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 188 bits (459), Expect = 2e-48
Identities = 93/137 (67%), Positives = 108/137 (78%), Gaps = 3/137 (2%)
Frame = +1
Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLD 315
ISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLD
Sbjct: 3 ISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLD 62
Query: 316 TGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL 495
TGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +
Sbjct: 63 TGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDI 122
Query: 496 GRKKGAKLT--EAEEAI 540
GRKK A +AE A+
Sbjct: 123 GRKKKAPAAKKDAEHAL 139
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +1
Query: 205 RKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 339
R+ +LG P+ +T+ P+R+ S+++R K+ A DTG F+WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +1
Query: 259 IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 438
+H + + GG T R +R + C +++ ++V++ + NELV T +N I+
Sbjct: 376 LHGLLASGGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQII 435
Query: 439 V 441
V
Sbjct: 436 V 436
>01_02_0013 + 10162478-10163581
Length = 367
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +2
Query: 239 PGSALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRP 418
PGS + F E +S RC P+ G R + A SL + ++HL +C RP
Sbjct: 226 PGSTVYSGIGFGSP-EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARP 282
Query: 419 L 421
L
Sbjct: 283 L 283
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 160 KRRATGGKRAPIRKKRKYELGRPAA---NTRLGPQRIHSVRSRGGNTKYRALR 309
KRR GG+RA R+K + E GR A R G R R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGR--RKRRRGGRRRRRRRR 131
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 160 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 294
KRR GG+RA R+K + E GR A R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 160 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 294
+RR GG+RA R+K + E GR A R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 242 GSALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMN 400
G + P + VV + + C+W + SLG R Q++K + L ++ + +N
Sbjct: 270 GHQMVTINPLLSVVAA-TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321
>01_01_1134 + 8994315-8995892
Length = 525
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 319 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 462
G FS C+ RK +DV + RT +N+ VV D+T F+
Sbjct: 146 GLFSRDCPCAGRKAVTVDVASEPRSPATPRTHARFENSHVVADSTIFK 193
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +1
Query: 313 DTGN-FSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD-ATPF 459
DT N FS+GS+ ++ + + + ++ S+ ++ + +V NA +VV A+PF
Sbjct: 1340 DTNNCFSYGSQRASTERTLGNDMHPGSSIQITESARIVNNANIVVQVASPF 1390
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 145 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS 267
R H T G+ P + Y LG P A +GP +H+
Sbjct: 210 RPETHTFHLTVGEMVPTLQDVSYLLGLPIAGAAVGPTMVHA 250
>12_02_0262 - 16545875-16546487,16549570-16550216
Length = 419
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/72 (23%), Positives = 31/72 (43%)
Frame = +1
Query: 124 LRSESISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRA 303
LR+E SR+ + A R + ++ + E + GP R H+ S+G +
Sbjct: 307 LRAEIESREKAGREAAEAKMRMAMAEQARAEAQAHSEMIGHGPLRAHAAASQGEDGPSHE 366
Query: 304 LRLDTGNFSWGS 339
+ + G WG+
Sbjct: 367 MMQEQGEDGWGN 378
>06_02_0131 +
12161268-12161781,12162123-12162867,12162950-12162986,
12163083-12163216,12163298-12163625
Length = 585
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = -3
Query: 458 NGVASTTTIAFLTRVFVRTNS---LLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLV 288
+G+ ST ++ FL + T + +L+ +YT ++ EH DP + + ++RYL+
Sbjct: 392 SGLQSTQSLPFLEEHDMSTEAFEKVLEYMYTDNL------EHMDPNQAEELFDIASRYLL 445
Query: 287 FP 282
FP
Sbjct: 446 FP 447
>12_02_1155 +
26541137-26541142,26541244-26542623,26542730-26542852,
26542996-26543168,26543332-26543572,26543931-26544023,
26544092-26544232,26544358-26544450,26544633-26544837,
26544993-26545078,26545532-26545620,26545736-26545820,
26545898-26545954,26546319-26546399,26547130-26547321
Length = 1014
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 493 LGRKKGAKLTEAEEAIITRREVKRQQ 570
LGRK + LTE +E +I RR ++ +Q
Sbjct: 222 LGRKSTSSLTELKERLIRRRMLEHKQ 247
>04_03_0549 - 17043135-17043351,17043641-17043846
Length = 140
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 483 IMRLIPLPEWSCIYYNNCILDKGL 412
++ L+ +P+WS +YY N +DK L
Sbjct: 72 LILLLLVPKWSIVYYLNSKIDKKL 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,777,994
Number of Sequences: 37544
Number of extensions: 334529
Number of successful extensions: 977
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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