Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10m22f
(616 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0) 192 1e-49
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068) 56 3e-08
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8) 29 4.0
SB_46109| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_12362| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3) 27 9.1
>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
Length = 192
Score = 192 bits (469), Expect = 1e-49
Identities = 86/121 (71%), Positives = 102/121 (84%)
Frame = +1
Query: 190 PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 369
P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE TRK RII
Sbjct: 4 PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63
Query: 370 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIITR 549
DVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK + TE E+ I+ +
Sbjct: 64 DVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNK 123
Query: 550 R 552
+
Sbjct: 124 K 124
>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
Length = 147
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/77 (31%), Positives = 47/77 (61%)
Frame = +1
Query: 250 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 429
P++I ++ GG+TK +ALR++ G ++ S+ + I+ V+++ +N E + +VK
Sbjct: 37 PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKG 96
Query: 430 AIVVVDATPFRQWYESH 480
+IV VD PF W++ +
Sbjct: 97 SIVQVDNKPFEDWFQEY 113
>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2537
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 166 RATGGKRAPIRKKRKYELGRPAANTRLGP 252
R GG R P+++ +E +P+ N R GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797
>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 127 RSESISRDHWHKRRATGGKRAPIRKKRK-YELGRPAANTRLGPQRIHSV 270
+ +S+S D W K++ K+ I+KKR+ + A LG QR+ +
Sbjct: 384 KMQSLSYDEWLKQKREQDKKQAIKKKREIIDSHLDAVVAELGKQRVERI 432
>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 349 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 462
T++ +I D++ N N VR +TL+ NA +++D F+
Sbjct: 18 TKRKKIADILSNEIRN--VRERTLILNAALIIDICVFK 53
>SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)
Length = 530
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = -3
Query: 479 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSMIRVLRVEHS 339
CD+ HC + T+T+ + +V + + ++ ++ V R +HS
Sbjct: 448 CDNDHCSQELCLTSTVDQIQQVLNNCDKIKTQVHVEGLVEVWRKDHS 494
>SB_46109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -3
Query: 149 SRLILS--DLKHSCFKKRFYKLLTLLRRFH*IYQIILWVNQLTHL 21
+RLI+ + K SCFK RF L LLR F + I L V + H+
Sbjct: 285 TRLIIQNQERKTSCFKHRFRSNLLLLRGFS-TFIIFLMVKRNLHV 328
>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 348 NSQNPYH*CCV*CI*Q*-IGAYKDPCQECNCCSRCNSI 458
+S YH C C+ I Y DP EC CS+C+ +
Sbjct: 192 DSLEVYHECFGGCVGTLEIELYTDPYAECVTCSQCDGV 229
>SB_12362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -1
Query: 136 SRISNTVVLRSVSINY*HYYEDFI 65
+R+SN+ VLR +++NY YE ++
Sbjct: 58 ARVSNSRVLRLLAVNYHQQYESYL 81
>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
Length = 811
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 227 PLQTPGSALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQL 352
P ++P L +TP VHVV + R V +TS+ +N+++
Sbjct: 632 PRRSPLLQLLSNTPDVHVVVVELFQRHVHAVLTSMAKKNIKI 673
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,277,450
Number of Sequences: 59808
Number of extensions: 394313
Number of successful extensions: 912
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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