Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m22f
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   272   2e-75
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    24   1.4  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    24   1.4  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   4.1  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   4.1  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   5.5  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   5.5  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   5.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.2  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.2  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   9.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.6  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   9.6  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   9.6  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  272 bits (666), Expect = 2e-75
 Identities = 121/144 (84%), Positives = 134/144 (93%)
 Frame = +1

Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 318
           ISRDHWHKRRATGGKR PIRKKRK+ELGRPAANT+LGPQRIH+VR+RGGN KYRALRLDT
Sbjct: 3   ISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRLDT 62

Query: 319 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLG 498
           GNFSWGSEC+TRKTRIIDVVYNASNNELVRTKTLVKNAIV +DATPFRQWYE HY LPLG
Sbjct: 63  GNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLG 122

Query: 499 RKKGAKLTEAEEAIITRREVKRQQ 570
           RK+GAKLTEAEE ++ ++  K+ +
Sbjct: 123 RKRGAKLTEAEEEVLNKKRSKKAE 146


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 441 YNNCILDKGLCT 406
           Y NC+LD+G CT
Sbjct: 46  YVNCLLDQGPCT 57


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 441 YNNCILDKGLCT 406
           Y NC+LD+G CT
Sbjct: 46  YVNCLLDQGPCT 57


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 441 YNNCILDKGLCTHQ 400
           Y  C+LD+G CT++
Sbjct: 43  YIKCMLDEGPCTNE 56


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 441 YNNCILDKGLCTHQ 400
           Y  C+LD+G CT++
Sbjct: 43  YIKCMLDEGPCTNE 56


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 474 LIPLPEWSCIYYNNC 430
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 474 LIPLPEWSCIYYNNC 430
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 474 LIPLPEWSCIYYNNC 430
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 474 LIPLPEWSCIYYNNC 430
           L P P+WS   Y +C
Sbjct: 109 LQPYPDWSFAKYEDC 123


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 474 LIPLPEWSCIYYNNC 430
           L P P+WS   Y +C
Sbjct: 110 LRPYPDWSFAKYEDC 124


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 474 LIPLPEWSCIYYNNC 430
           L P P+WS   Y +C
Sbjct: 108 LQPYPDWSWANYKDC 122


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 474 LIPLPEWSCIYYNNC 430
           L P P+WS   Y +C
Sbjct: 108 LQPYPDWSWANYKDC 122


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 441 YNNCILDKGLCT 406
           Y  C++D+G CT
Sbjct: 47  YFKCLMDEGRCT 58


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 352 RKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 465
           RK  + +VVY    N + +    V + I ++ A+P ++
Sbjct: 358 RKRPMHNVVYRPGENPVTQRLPAVLSRIGIILASPLKR 395


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 441 YNNCILDKGLCT 406
           Y  C++D+G CT
Sbjct: 47  YFKCLMDEGRCT 58


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 441 YNNCILDKGLCT 406
           Y  C++D+G CT
Sbjct: 47  YFKCLMDEGRCT 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,853
Number of Sequences: 438
Number of extensions: 3461
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)