Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m22f
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   190   6e-49
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   185   2e-47
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   2.4  
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    29   3.2  
At3g07950.1 68416.m00972 rhomboid protein-related contains 6 tra...    28   4.3  
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    28   5.7  
At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1) i...    27   9.9  
At1g32840.1 68414.m04047 Ulp1 protease family protein similar to...    27   9.9  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  190 bits (463), Expect = 6e-49
 Identities = 98/150 (65%), Positives = 114/150 (76%), Gaps = 8/150 (5%)
 Frame = +1

Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLD 315
           ISRD  HKRRATGGK+   RKKRKYE+GR  ANT+L   + +  +R RGGN K+RALRLD
Sbjct: 3   ISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLD 62

Query: 316 TGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL 495
           TGN+SWGSE +TRKTR++DVVYNASNNELVRTKTLVK+AIV VDA PF+QWY SHY + L
Sbjct: 63  TGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVEL 122

Query: 496 GR-KKGAKLT-----EAEEAIITR-REVKR 564
           GR KK A  T     E EEA +    EVK+
Sbjct: 123 GRKKKSASSTKKDGEEGEEAAVAAPEEVKK 152


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  185 bits (451), Expect = 2e-47
 Identities = 94/154 (61%), Positives = 111/154 (72%), Gaps = 1/154 (0%)
 Frame = +1

Query: 139 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLD 315
           ISRD  HKRRATGGK+   RKKRKYELGR  ANT+L   + +  +R RGGN K+RALRLD
Sbjct: 3   ISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLD 62

Query: 316 TGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPL 495
           TGNFSWGSE  TRKTRI+DV YNASNNELVRT+TLVK+AIV VDA PF+Q Y  HY + +
Sbjct: 63  TGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDI 122

Query: 496 GRKKGAKLTEAEEAIITRREVKRQQENTWQGNVL 597
           GRKK  +    EE +     V+R+ E   +G  L
Sbjct: 123 GRKKKGEAVTTEE-VKKSNHVQRKLEMRQEGRAL 155


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 400 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 528
           L  T  L  NA   VVD      ++ES+Y LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 280 GGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 441
           GG T  R +R      +    C    +++ ++V++ + NELV T    +N I+V
Sbjct: 353 GGGTADRCIRFWNTTTNTHLNCVDTNSQVCNLVWSKNVNELVSTHGYSQNQIIV 406


>At3g07950.1 68416.m00972 rhomboid protein-related contains 6
           transmembrane domains; similar to phosphatidyl inositol
           glycan class T (GI:14456615) [Homo sapiens]
          Length = 304

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = +1

Query: 106 FLKQLCLRSESISRDHWHKRRATGGKRAP----IRKKRKYELGRPAANTRLGPQRIHSVR 273
           F + LC RS + S DH +   +T G   P        R+ E G  A   RLG +R+   R
Sbjct: 235 FHRMLCGRSNATSEDHDY---STSGAPLPGSDSAEASRRRERGARALEERLGTERLVPAR 291

Query: 274 SR 279
           ++
Sbjct: 292 NK 293


>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 410 VRTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLVFPP 279
           +R+ S LD+L     +RVL V H+    +LPV   + RYL   P
Sbjct: 580 IRSFSALDSLRHLKQLRVLDVSHNHICGELPVD--TTRYLCSSP 621


>At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1)
           identical to Swiss-Prot:Q9SWI1 phytochrome kinase
           substrate 1 [Arabidopsis thaliana]
          Length = 439

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 187 APIRKKRKYELGRPAANTRLGPQRIHSVRSRGGN 288
           +P+R+ R  ++ R     +  PQR  S  S GGN
Sbjct: 339 SPVRRNRPTQIPRIPITAKSAPQRRKSSSSSGGN 372


>At1g32840.1 68414.m04047 Ulp1 protease family protein similar to
           At4g04010, At2g06430, At2g15140, At2g04980, At2g14130,
           At3g44500, At2g15190, At3g47260, At5g34900, At3g29210,
           At2g02210, At3g32900
          Length = 611

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/88 (21%), Positives = 36/88 (40%)
 Frame = +1

Query: 331 WGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKG 510
           W + C      + +V  N  NN++  ++ L +   ++ D     +  E    + +  K  
Sbjct: 117 WNTRCVDVCAALEEVGQNKINNKISDSEKLDRILTILEDLNKRVELIERILDIRMEEKNN 176

Query: 511 AKLTEAEEAIITRREVKRQQENTWQGNV 594
            +  E EE      EV+RQ E   +G +
Sbjct: 177 QRSEEDEERKQEHEEVERQLEAEEEGGL 204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,548,089
Number of Sequences: 28952
Number of extensions: 261526
Number of successful extensions: 658
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)