Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m21r
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    27   2.3  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    26   5.4  
SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces ...    26   7.1  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    25   9.4  

>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 481 SYPEVCGKLINPNQQKGMRPHLRKVTDPSKRF 386
           +Y  VCGK  +P+Q+K +R   R++  P ++F
Sbjct: 417 AYAAVCGKTRSPHQKKPLRVEFRQLR-PMQQF 447


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 749 YYTPTRNNKEADYTAPIYTPQNRNPT 672
           Y TPT       Y  P YTP  RNP+
Sbjct: 590 YPTPTMPYIPVGYPVPGYTPYMRNPS 615


>SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
 Frame = -2

Query: 724 KKLITQLLFTPHKIATPLQNADAAVTYWLTSGAPSQKIVLSIATFGRTWKLDADSEIAGV 545
           +KLI  L      +A   +N+     YW   G P + + ++ A+      L    E+  +
Sbjct: 116 EKLIAFLAKRLVIVADSRKNSHVLGEYW-KKGVPIEVMPMAYASI-----LPQLVELGAI 169

Query: 544 PP-IHTDGPGEAGPYVKTEGLLSYPEVCGKLINPNQ 440
            P +    PG+AGP V   G        G + NP +
Sbjct: 170 EPKLRMGAPGKAGPVVTDNGNFIIDAHFGLIKNPKE 205


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
 Frame = -2

Query: 556 IAGVPPIHTDGPGEAGPYVKTEGL-------LSYPEVCGKLINPNQQKGMRPHLRKVTDP 398
           I  +P I  + PG  G     EG+       LS  +   K   P     +   + KV   
Sbjct: 111 IVSIPEIQLEIPGRLGQLTTIEGILSNVVDDLSKEQESRKESAPQLYDQINAFIEKVN-- 168

Query: 397 SKRFGTYAFRLPDDNGEGGIWVSYEDPDTAGQKAAYVKSK 278
           S R G+  F +  D+  G  W+  + P   G + + V  K
Sbjct: 169 SLRSGSVPFTITVDDITGNSWIEMK-PGRDGDRWSQVSYK 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,351,717
Number of Sequences: 5004
Number of extensions: 75771
Number of successful extensions: 223
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)