Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m21r
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   7.5  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   10.0 
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   10.0 

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
 Frame = -2

Query: 607 LSIATFGRTWKLDADSEIAGVP---------PIHTDGPGEAGPYVKTEGL 485
           LSI + G  W++   SE   +P         P+H  G    GP V   G+
Sbjct: 33  LSIYSGGSDWRVAGRSESVVIPGDIVLGGLFPVHEKGGASCGPNVYNRGV 82


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 696 HPTKSQPHCRTPTPLSHTGSRAVLQ 622
           H   + PH +  TPL+H+   A +Q
Sbjct: 434 HSHAATPHHQHSTPLAHSSYPAAIQ 458


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 689 VGCK*ELCNQLLCCCVSE 742
           +GC+ + CN    CC ++
Sbjct: 433 IGCECKTCNSKTKCCFAQ 450


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 668 ERRRRCHILAHERCSKPKDSIVYR 597
           + R+ C  +AH   SK + SIV R
Sbjct: 90  QNRKFCAEIAHGGSSKKRKSIVER 113


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 528 SVWIGGTPAISLS 566
           SVWIGG+   SLS
Sbjct: 113 SVWIGGSILASLS 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,169
Number of Sequences: 438
Number of extensions: 5400
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)